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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060276.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66610.1 68418.m08396 LIM domain-containing protein contains ...    41   7e-04
At4g36860.1 68417.m05226 LIM domain-containing protein low simil...    41   7e-04
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    41   9e-04
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    39   0.004
At5g13290.2 68418.m01527 protein kinase family protein contains ...    36   0.033
At5g13290.1 68418.m01526 protein kinase family protein contains ...    36   0.033
At5g40030.1 68418.m04854 protein kinase, putative similar to stp...    33   0.13 
At3g55770.1 68416.m06197 LIM domain-containing protein similar t...    33   0.13 
At2g39900.1 68415.m04904 LIM domain-containing protein similar t...    33   0.23 
At1g10200.1 68414.m01150 transcription factor LIM, putative stro...    33   0.23 
At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    31   0.54 
At3g61230.1 68416.m06852 LIM domain-containing protein similar t...    31   0.54 
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    31   0.54 
At5g66630.1 68418.m08398 LIM domain-containing protein contains ...    31   0.94 
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    30   1.2  
At5g60030.1 68418.m07527 expressed protein                             30   1.6  
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa...    30   1.6  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   6.6  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   6.6  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   6.6  
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei...    28   6.6  
At1g72190.1 68414.m08347 oxidoreductase family protein similar t...    28   6.6  
At5g55910.1 68418.m06972 protein kinase, putative contains prote...    27   8.8  
At4g26610.1 68417.m03835 protein kinase, putative similar to pro...    27   8.8  

>At5g66610.1 68418.m08396 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 529

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 301 WHEKCFCCVVCKNPIGTKSF--IPREQEIYCAGCYEDKFATRCVKCNKIITQGRRYV 465
           WH +CFCC  C  PI    +   P  +E YC   +E     +C  C ++   G +YV
Sbjct: 221 WHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP-FHEVDGTPKCCSCERLEPWGTKYV 276


>At4g36860.1 68417.m05226 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 351

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444
           WH +CFCC  C  PI    F       Y   CY+++   +C  C+  I
Sbjct: 5   WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFI 52


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
            resistance protein-related low similarity to disease
            resistance protein RPP4 [Arabidopsis thaliana]
            GI:20270890; contains Pfam profiles PF00412: LIM domain,
            PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 301  WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444
            WH +CFCC+ C+ PI     I   + +Y   CY++     C  C K I
Sbjct: 1260 WHPQCFCCLRCREPIAMNE-ISDLRGMYHKPCYKELRHPNCYVCEKKI 1306


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444
           WH +CF C  C  PI    F       +   CY +++  +C  C+  I
Sbjct: 192 WHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFI 239


>At5g13290.2 68418.m01527 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 331

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = -3

Query: 362 MKLFVPIGFLQTTQQKHFSCHCLVLYSIFLVPATVFLDR----------LTNISPVTHSK 213
           ++L V +G ++  Q  HFSC   +L+   L P  V LD           L  I P +H+ 
Sbjct: 227 IRLRVAVGIVKGLQYLHFSCETQILH-YNLKPTNVMLDSEFEPRLADCGLAKIMPSSHTA 285

Query: 212 TSCFPSPQS 186
            SC+ +P+S
Sbjct: 286 VSCYSAPES 294


>At5g13290.1 68418.m01526 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
 Frame = -3

Query: 362 MKLFVPIGFLQTTQQKHFSCHCLVLYSIFLVPATVFLDR----------LTNISPVTHSK 213
           ++L V +G ++  Q  HFSC   +L+   L P  V LD           L  I P +H+ 
Sbjct: 202 IRLRVAVGIVKGLQYLHFSCETQILH-YNLKPTNVMLDSEFEPRLADCGLAKIMPSSHTA 260

Query: 212 TSCFPSPQS 186
            SC+ +P+S
Sbjct: 261 VSCYSAPES 269


>At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1
           protein kinase [Solanum tuberosum]
           gi|1200256|emb|CAA62476
          Length = 499

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 110 VGQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQE 271
           +G+ ++ RA+   E + +L   FLP   +  E +KF C L E C  GD   L Q+
Sbjct: 151 IGRKKLVRAQTEREILGLLDHPFLPTLYSHFETEKFSCLLMEFCSGGDLHILRQK 205


>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 199

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +1

Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
           +KTV   + +      +H+ CF C  CK+ +   S+   E  +YC   +E  F
Sbjct: 14  EKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
           KTV   +K+  +++ +H+ CF C     PI   ++   E  +YC
Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYC 156


>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 200

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +1

Query: 244 RRSKKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
           R  +KTV   + +      +H+ CF C  CK+ +   ++   E  +YC   +E  F
Sbjct: 11  RACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF 66



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
           KTV   +K+  +++ +H+ CF C     PI   ++   E  +YC
Sbjct: 114 KTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYC 157


>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
           similarity to transcription factor Ntlim1 [Nicotiana
           tabacum] GI:5689136, LIM domain protein WLIM-1
           [Helianthus annuus] GI:5070280; contains Pfam profile
           PF00412: LIM domain
          Length = 190

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
           KTV    K+    R +H+ CF C  CK  +   ++   E  +YC   ++  F
Sbjct: 15  KTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF 66



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
           KTV   +K+      +H+ CF C      I   ++I  E ++YC
Sbjct: 115 KTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYC 158


>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 301 WHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 402
           WH  CFCC  C  PI     ++ +   +  +   CYE
Sbjct: 306 WHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYE 342


>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
           SP|P29675 Pollen specific protein SF3 {Helianthus
           annuus}; contains Pfam profile PF00412: LIM domain
          Length = 213

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
           KKTV   +KM  +   +H+ CF C     P+   S+   +  +YC
Sbjct: 111 KKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYC 155


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
           KTV     +  +   +H+ CF C  CK  +   ++   +  +YC   +E  F
Sbjct: 15  KTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66


>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
           similarity to Pfam profile PF00412: LIM domain
          Length = 702

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 301 WHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 402
           WH  CFCC  C  PI     ++ +   +  +   CYE
Sbjct: 367 WHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYE 403


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411
           KTV     +  +   +H+ CF C  CK  +   ++   +  +YC   +E  F
Sbjct: 15  KTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387
           KKTV   +K+  +   +H+ CF C     P+   S+      +YC
Sbjct: 110 KKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYC 154


>At5g60030.1 68418.m07527 expressed protein
          Length = 292

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 8   RRQQCCLKTKKKNKMSADVLSEDLKSRLHLTMKTVG--QDRIRRARENNED 154
           RR++   K KKKN    DV+ E +K +L    K+    + + +++++NN++
Sbjct: 146 RRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSKKNNDE 196


>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 480

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
 Frame = +1

Query: 313 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF----ATRCVKCN 435
           C  C +C NP    + I      +C  C  +KF       C  CN
Sbjct: 13  CLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCN 57


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280
           ++++ RA+   E +++L   FLP   +  E  KF C + E C  G+   L Q +P R
Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280
           ++++ RA+   E +++L   FLP   +  E  KF C + E C  G+   L Q +P R
Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280
           ++++ RA+   E +++L   FLP   +  E  KF C + E C  G+   L Q +P R
Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280


>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 268

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +1

Query: 268 GTKKMEYKTRQWHEKCFC--CVVCKNPIGTKSFIPREQEIYCAGCYEDKFATR--CVKCN 435
           G +   Y  R +  +C     ++  N      ++PR  +  C GC  + +A+R  C KC 
Sbjct: 13  GCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWLPRIGDWICTGCTNNNYASREKCKKCG 72

Query: 436 K 438
           +
Sbjct: 73  Q 73


>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
           D-3-phosphoglycerate dehydrogenase from Arabidopsis
           thaliana [SP|O04130], glyoxylate reductase from Homo
           sapiens (gi:6002730); contains Pfam D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain PF02826
          Length = 373

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 152 DVAILSMFLPNATAERENKKFCCALRERCLL 244
           D+ ++ + L   TAE  NK+F C++++  LL
Sbjct: 254 DIVVVCLRLNKETAEIVNKEFICSMKKGALL 284


>At5g55910.1 68418.m06972 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 498

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268
           ++ RA+   E +  L   FLP   +  E +KF C + E C  GD   L Q
Sbjct: 150 KLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQ 199


>At4g26610.1 68417.m03835 protein kinase, putative similar to
           protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
          Length = 506

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268
           ++ RA+   E +  L   FLP   +  E +KF C + E C  GD   L Q
Sbjct: 164 KLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQ 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,372
Number of Sequences: 28952
Number of extensions: 260701
Number of successful extensions: 842
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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