BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060276.seq (685 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 41 7e-04 At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 41 7e-04 At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 41 9e-04 At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 39 0.004 At5g13290.2 68418.m01527 protein kinase family protein contains ... 36 0.033 At5g13290.1 68418.m01526 protein kinase family protein contains ... 36 0.033 At5g40030.1 68418.m04854 protein kinase, putative similar to stp... 33 0.13 At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 33 0.13 At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 33 0.23 At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 33 0.23 At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 31 0.54 At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 31 0.54 At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 31 0.54 At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 31 0.94 At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 30 1.2 At5g60030.1 68418.m07527 expressed protein 30 1.6 At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 1.6 At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 28 6.6 At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 28 6.6 At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 28 6.6 At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 28 6.6 At1g72190.1 68414.m08347 oxidoreductase family protein similar t... 28 6.6 At5g55910.1 68418.m06972 protein kinase, putative contains prote... 27 8.8 At4g26610.1 68417.m03835 protein kinase, putative similar to pro... 27 8.8 >At5g66610.1 68418.m08396 LIM domain-containing protein contains Pfam profile PF00412: LIM domain Length = 529 Score = 41.1 bits (92), Expect = 7e-04 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIGTKSF--IPREQEIYCAGCYEDKFATRCVKCNKIITQGRRYV 465 WH +CFCC C PI + P +E YC +E +C C ++ G +YV Sbjct: 221 WHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP-FHEVDGTPKCCSCERLEPWGTKYV 276 >At4g36860.1 68417.m05226 LIM domain-containing protein low similarity to LIM-domain protein [Branchiostoma floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens] GI:7209525; contains Pfam profile PF00412: LIM domain Length = 351 Score = 41.1 bits (92), Expect = 7e-04 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444 WH +CFCC C PI F Y CY+++ +C C+ I Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFI 52 >At5g17890.1 68418.m02098 LIM domain-containing protein / disease resistance protein-related low similarity to disease resistance protein RPP4 [Arabidopsis thaliana] GI:20270890; contains Pfam profiles PF00412: LIM domain, PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat Length = 1613 Score = 40.7 bits (91), Expect = 9e-04 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444 WH +CFCC+ C+ PI I + +Y CY++ C C K I Sbjct: 1260 WHPQCFCCLRCREPIAMNE-ISDLRGMYHKPCYKELRHPNCYVCEKKI 1306 >At1g19270.1 68414.m02397 ubiquitin interaction motif-containing protein / LIM domain-containing protein weak similarity to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5 [Mus musculus] GI:664955; contains Pfam profiles PF02809: Ubiquitin interaction motif, PF00412: LIM domain Length = 532 Score = 38.7 bits (86), Expect = 0.004 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII 444 WH +CF C C PI F + CY +++ +C C+ I Sbjct: 192 WHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFI 239 >At5g13290.2 68418.m01527 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 331 Score = 35.5 bits (78), Expect = 0.033 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%) Frame = -3 Query: 362 MKLFVPIGFLQTTQQKHFSCHCLVLYSIFLVPATVFLDR----------LTNISPVTHSK 213 ++L V +G ++ Q HFSC +L+ L P V LD L I P +H+ Sbjct: 227 IRLRVAVGIVKGLQYLHFSCETQILH-YNLKPTNVMLDSEFEPRLADCGLAKIMPSSHTA 285 Query: 212 TSCFPSPQS 186 SC+ +P+S Sbjct: 286 VSCYSAPES 294 >At5g13290.1 68418.m01526 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 376 Score = 35.5 bits (78), Expect = 0.033 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%) Frame = -3 Query: 362 MKLFVPIGFLQTTQQKHFSCHCLVLYSIFLVPATVFLDR----------LTNISPVTHSK 213 ++L V +G ++ Q HFSC +L+ L P V LD L I P +H+ Sbjct: 202 IRLRVAVGIVKGLQYLHFSCETQILH-YNLKPTNVMLDSEFEPRLADCGLAKIMPSSHTA 260 Query: 212 TSCFPSPQS 186 SC+ +P+S Sbjct: 261 VSCYSAPES 269 >At5g40030.1 68418.m04854 protein kinase, putative similar to stpk1 protein kinase [Solanum tuberosum] gi|1200256|emb|CAA62476 Length = 499 Score = 33.5 bits (73), Expect = 0.13 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +2 Query: 110 VGQDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQE 271 +G+ ++ RA+ E + +L FLP + E +KF C L E C GD L Q+ Sbjct: 151 IGRKKLVRAQTEREILGLLDHPFLPTLYSHFETEKFSCLLMEFCSGGDLHILRQK 205 >At3g55770.1 68416.m06197 LIM domain-containing protein similar to pollen specific LIM domain protein 1b [Nicotiana tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida] GI:4105772; contains Pfam profile PF00412: LIM domain Length = 199 Score = 33.5 bits (73), Expect = 0.13 Identities = 15/53 (28%), Positives = 25/53 (47%) Frame = +1 Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411 +KTV + + +H+ CF C CK+ + S+ E +YC +E F Sbjct: 14 EKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387 KTV +K+ +++ +H+ CF C PI ++ E +YC Sbjct: 113 KTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYC 156 >At2g39900.1 68415.m04904 LIM domain-containing protein similar to pollen specific LIM domain protein 1b [Nicotiana tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida] GI:4105772; contains Pfam profile PF00412: LIM domain Length = 200 Score = 32.7 bits (71), Expect = 0.23 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = +1 Query: 244 RRSKKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411 R +KTV + + +H+ CF C CK+ + ++ E +YC +E F Sbjct: 11 RACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF 66 Score = 28.7 bits (61), Expect = 3.8 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387 KTV +K+ +++ +H+ CF C PI ++ E +YC Sbjct: 114 KTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYC 157 >At1g10200.1 68414.m01150 transcription factor LIM, putative strong similarity to transcription factor Ntlim1 [Nicotiana tabacum] GI:5689136, LIM domain protein WLIM-1 [Helianthus annuus] GI:5070280; contains Pfam profile PF00412: LIM domain Length = 190 Score = 32.7 bits (71), Expect = 0.23 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411 KTV K+ R +H+ CF C CK + ++ E +YC ++ F Sbjct: 15 KTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF 66 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/44 (29%), Positives = 21/44 (47%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387 KTV +K+ +H+ CF C I ++I E ++YC Sbjct: 115 KTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYC 158 >At5g66620.1 68418.m08397 LIM domain-containing protein contains Pfam profile PF00412: LIM domain Length = 644 Score = 31.5 bits (68), Expect = 0.54 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 402 WH CFCC C PI ++ + + + CYE Sbjct: 306 WHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYE 342 >At3g61230.1 68416.m06852 LIM domain-containing protein similar to SP|P29675 Pollen specific protein SF3 {Helianthus annuus}; contains Pfam profile PF00412: LIM domain Length = 213 Score = 31.5 bits (68), Expect = 0.54 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387 KKTV +KM + +H+ CF C P+ S+ + +YC Sbjct: 111 KKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYC 155 >At1g01780.1 68414.m00097 LIM domain-containing protein similar to PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain protein PLIM1 [Nicotiana tabacum] GI:5932418; contains Pfam profile PF00412: LIM domain Length = 205 Score = 31.5 bits (68), Expect = 0.54 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411 KTV + + +H+ CF C CK + ++ + +YC +E F Sbjct: 15 KTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66 >At5g66630.1 68418.m08398 LIM domain-containing protein contains low similarity to Pfam profile PF00412: LIM domain Length = 702 Score = 30.7 bits (66), Expect = 0.94 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Frame = +1 Query: 301 WHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 402 WH CFCC C PI ++ + + + CYE Sbjct: 367 WHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYE 403 >At2g45800.1 68415.m05696 LIM domain-containing protein similar to PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain protein PLIM1 [Nicotiana tabacum] GI:5932418; contains Pfam profile PF00412: LIM domain Length = 226 Score = 30.3 bits (65), Expect = 1.2 Identities = 13/52 (25%), Positives = 23/52 (44%) Frame = +1 Query: 256 KTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 411 KTV + + +H+ CF C CK + ++ + +YC +E F Sbjct: 15 KTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +1 Query: 253 KKTVAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYC 387 KKTV +K+ + +H+ CF C P+ S+ +YC Sbjct: 110 KKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYC 154 >At5g60030.1 68418.m07527 expressed protein Length = 292 Score = 29.9 bits (64), Expect = 1.6 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +2 Query: 8 RRQQCCLKTKKKNKMSADVLSEDLKSRLHLTMKTVG--QDRIRRARENNED 154 RR++ K KKKN DV+ E +K +L K+ + + +++++NN++ Sbjct: 146 RRERKKEKKKKKNNKDEDVVDEKVKEKLEDEQKSADRKERKKKKSKKNNDE 196 >At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) Length = 480 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%) Frame = +1 Query: 313 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF----ATRCVKCN 435 C C +C NP + I +C C +KF C CN Sbjct: 13 CLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCN 57 >At3g12690.3 68416.m01586 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 6.6 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +2 Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280 ++++ RA+ E +++L FLP + E KF C + E C G+ L Q +P R Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280 >At3g12690.2 68416.m01585 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 6.6 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +2 Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280 ++++ RA+ E +++L FLP + E KF C + E C G+ L Q +P R Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280 >At3g12690.1 68416.m01584 protein kinase, putative similar to viroid symptom modulation protein [Lycopersicon esculentum] gi|7672777|gb|AAF66637 Length = 577 Score = 27.9 bits (59), Expect = 6.6 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +2 Query: 116 QDRIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ-EPRR 280 ++++ RA+ E +++L FLP + E KF C + E C G+ L Q +P R Sbjct: 224 RNKLLRAQTEREILSLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPSR 280 >At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein contains Pfam domain, PF00641: Zn-finger in Ran binding protein and others Length = 268 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Frame = +1 Query: 268 GTKKMEYKTRQWHEKCFC--CVVCKNPIGTKSFIPREQEIYCAGCYEDKFATR--CVKCN 435 G + Y R + +C ++ N ++PR + C GC + +A+R C KC Sbjct: 13 GCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWLPRIGDWICTGCTNNNYASREKCKKCG 72 Query: 436 K 438 + Sbjct: 73 Q 73 >At1g72190.1 68414.m08347 oxidoreductase family protein similar to D-3-phosphoglycerate dehydrogenase from Arabidopsis thaliana [SP|O04130], glyoxylate reductase from Homo sapiens (gi:6002730); contains Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02826 Length = 373 Score = 27.9 bits (59), Expect = 6.6 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +2 Query: 152 DVAILSMFLPNATAERENKKFCCALRERCLL 244 D+ ++ + L TAE NK+F C++++ LL Sbjct: 254 DIVVVCLRLNKETAEIVNKEFICSMKKGALL 284 >At5g55910.1 68418.m06972 protein kinase, putative contains protein kinase domain, Pfam:PF00069 Length = 498 Score = 27.5 bits (58), Expect = 8.8 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +2 Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268 ++ RA+ E + L FLP + E +KF C + E C GD L Q Sbjct: 150 KLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQ 199 >At4g26610.1 68417.m03835 protein kinase, putative similar to protein kinase G11A [Oryza sativa] SWISS-PROT:P47997 Length = 506 Score = 27.5 bits (58), Expect = 8.8 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = +2 Query: 122 RIRRARENNEDVAILSM-FLPNATAERENKKFCCALRERCLLGDPRKLLQ 268 ++ RA+ E + L FLP + E +KF C + E C GD L Q Sbjct: 164 KLLRAQTEREILQCLDHPFLPTLYSHFETEKFSCLVMEFCPGGDLHTLRQ 213 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,588,372 Number of Sequences: 28952 Number of extensions: 260701 Number of successful extensions: 842 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 840 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1447936096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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