Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060274.seq
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283...   128   3e-30
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986...   124   6e-29
08_02_0657 - 19749835-19751942,19753123-19753561                       93   1e-19
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684...    29   4.4  
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    28   7.7  

>03_01_0364 -
           2834446-2834742,2834838-2835197,2835281-2835562,
           2835634-2835705,2835798-2836019,2836105-2836871,
           2837206-2837434,2838027-2838189,2838313-2838350
          Length = 809

 Score =  128 bits (310), Expect = 3e-30
 Identities = 66/127 (51%), Positives = 81/127 (63%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GDTVLLKGK+RK+T+CIVL+DD C + KIRM             DVVS+  CP VKYGKR
Sbjct: 61  GDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKR 120

Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
           VHILPIDD+VEG+TGNLF+ +LKP  +    R +     +   G       K  ETDP+ 
Sbjct: 121 VHILPIDDTVEGITGNLFDAFLKP-YFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAE 179

Query: 613 FCIVAXD 633
           +CIVA D
Sbjct: 180 YCIVAPD 186



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +2

Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           +D K   D STAIL RK  PNRL+V+EA +DDNSV+ +    ME+LQLF
Sbjct: 11  SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLF 59


>10_08_0170 +
           15397381-15397418,15397519-15397681,15398419-15398647,
           15398777-15399543,15399650-15399871,15399961-15400032,
           15400100-15400408,15400491-15400850,15401199-15401492
          Length = 817

 Score =  124 bits (299), Expect = 6e-29
 Identities = 64/127 (50%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GDTVLLKGK+RK+T+CIVL+D+ C + KIRM             DVVS+  C  VKYGKR
Sbjct: 61  GDTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKR 120

Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
           VHILPIDD+VEG+TGNLF+ +LKP  +    R +     +   G       K  ETDP+ 
Sbjct: 121 VHILPIDDTVEGITGNLFDAFLKP-YFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTE 179

Query: 613 FCIVAXD 633
           +CIVA D
Sbjct: 180 YCIVAPD 186



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 32/49 (65%), Positives = 36/49 (73%)
 Frame = +2

Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           AD K   D STAIL RK  PNRL+V+EA +DDNSVVAL    ME+LQLF
Sbjct: 11  ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLF 59


>08_02_0657 - 19749835-19751942,19753123-19753561
          Length = 848

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 38/84 (45%), Positives = 56/84 (66%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GD V L+G+RR+E VC    D++CPD ++R+             D+V++ PCP+++  KR
Sbjct: 64  GDLVTLRGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKR 123

Query: 436 VHILPIDDSVEGLTGNLFEVYLKP 507
           V + P DDSVEG++G+LFE YLKP
Sbjct: 124 VQLRPFDDSVEGISGDLFEPYLKP 147



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 498 LEAVFMEAYRPIHRDDTFMVRGGMRAVEFKVV 593
           L+  FM+A RP+ + D F+VRG M AVEFKV+
Sbjct: 145 LKPYFMDALRPVKKGDRFLVRGHMHAVEFKVM 176



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
 Frame = +2

Query: 128 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLF 253
           D STAIL   +K  PNRL+ ++A   V+ DNS V LS+A ME+L +F
Sbjct: 16  DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIF 62


>04_04_0735 -
           27667780-27667887,27668116-27668211,27668346-27668455,
           27668545-27668648,27669279-27669556
          Length = 231

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 474 YWQSIRSIL--EAVFMEAYRPIHRDDTFMVRGGMRAVEFKVVR 596
           YW S  + L    + ++ Y P+ +DD F+VR  M+ V+ K VR
Sbjct: 142 YWTSTGNALALSELNLKFYTPLRKDDRFVVR--MKVVKIKGVR 182


>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 611 GDGSVSDHFELDGAHAPADHEGVVTMDRTVSLHEDGFKYTSNRLPVRPSTESSIGS 444
           GD +  DHF       P DH     ++  + L +DG+ Y  +   +RPS  ++  S
Sbjct: 61  GDAAAGDHFSSASGPLP-DHVRREILE--LGLPDDGYNYLHHLRELRPSAAAAASS 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,851,483
Number of Sequences: 37544
Number of extensions: 395336
Number of successful extensions: 1071
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)