Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060274.seq
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         73   3e-13
SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/43 (76%), Positives = 40/43 (93%)
 Frame = +2

Query: 125 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLF
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLF 47



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/47 (57%), Positives = 31/47 (65%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 396
           GDTVL+KGK+RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 49  GDTVLIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 34.3 bits (75), Expect = 0.091
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +3

Query: 543 DTFMVRGGMRAVEFKVV 593
           D F+VRGGMRAVEFKV+
Sbjct: 104 DMFLVRGGMRAVEFKVI 120



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 595 ETDPSPFCIVAXD 633
           ETDPSP+CIVA D
Sbjct: 121 ETDPSPYCIVAPD 133


>SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 521 LPSDPS*RHLHGPR--GHARRRVQSGPKQIHHHFAS 622
           +P+DPS  H H P    H  + +   P+QIHH F S
Sbjct: 95  IPTDPSHVHQHIPTDPSHVNKHI---PQQIHHMFTS 127


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 658 GFTVTVIXDQXPRCKMVMDLFRTTLNSTARMPPRTMKV 545
           G T  +      RCK++M  ++ TL +  RMP +T  V
Sbjct: 499 GVTRALTETVLSRCKIIMGFYQVTLKTLHRMPFKTSGV 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,565,324
Number of Sequences: 59808
Number of extensions: 447598
Number of successful extensions: 1296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)