Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060274.seq
(670 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 144 2e-34
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 144 2e-34
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 144 2e-34
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 144 2e-34
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 142 1e-33
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 124 4e-28
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 144 bits (350), Expect = 2e-34
Identities = 74/127 (58%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GDTVLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR
Sbjct: 54 GDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKR 113
Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
+H+LPIDD+VEG+TGNLFEVYLKP + R I + G K ETDPSP
Sbjct: 114 IHVLPIDDTVEGITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSP 172
Query: 613 FCIVAXD 633
+CIVA D
Sbjct: 173 YCIVAPD 179
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = +2
Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLF
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLF 52
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 144 bits (350), Expect = 2e-34
Identities = 74/127 (58%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GDTVLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR
Sbjct: 54 GDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKR 113
Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
+H+LPIDD+VEG+TGNLFEVYLKP + R I + G K ETDPSP
Sbjct: 114 IHVLPIDDTVEGITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSP 172
Query: 613 FCIVAXD 633
+CIVA D
Sbjct: 173 YCIVAPD 179
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = +2
Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLF
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLF 52
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 144 bits (350), Expect = 2e-34
Identities = 74/127 (58%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GDTVLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR
Sbjct: 54 GDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKR 113
Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
+H+LPIDD+VEG+TGNLFEVYLKP + R I + G K ETDPSP
Sbjct: 114 IHVLPIDDTVEGITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSP 172
Query: 613 FCIVAXD 633
+CIVA D
Sbjct: 173 YCIVAPD 179
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = +2
Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLF
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLF 52
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 144 bits (350), Expect = 2e-34
Identities = 74/127 (58%), Positives = 84/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GDTVLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR
Sbjct: 54 GDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKR 113
Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
+H+LPIDD+VEG+TGNLFEVYLKP + R I + G K ETDPSP
Sbjct: 114 IHVLPIDDTVEGITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSP 172
Query: 613 FCIVAXD 633
+CIVA D
Sbjct: 173 YCIVAPD 179
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = +2
Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLF
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLF 52
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 142 bits (343), Expect = 1e-33
Identities = 73/127 (57%), Positives = 83/127 (65%), Gaps = 1/127 (0%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GDTVLLKGK+R+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR
Sbjct: 54 GDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKR 113
Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
+H+LPIDD+VEG+TGNLFEVYLKP + R I + G K ET PSP
Sbjct: 114 IHVLPIDDTVEGITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSP 172
Query: 613 FCIVAXD 633
+CIVA D
Sbjct: 173 YCIVAPD 179
Score = 73.7 bits (173), Expect = 5e-13
Identities = 35/49 (71%), Positives = 46/49 (93%)
Frame = +2
Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLF
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLF 52
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 124 bits (298), Expect = 4e-28
Identities = 64/116 (55%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Frame = +1
Query: 289 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 468
+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 469 GLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSPFCIVAXD 633
G+TGNLFEVYLKP + R I + G K ETDPSP+CIVA D
Sbjct: 63 GITGNLFEVYLKP-YFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPD 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,134,314
Number of Sequences: 237096
Number of extensions: 2097641
Number of successful extensions: 4788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4776
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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