Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060274.seq
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 122 2e-28
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 116 1e-26
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 30 1.3
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 30 1.3
AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical ... 29 3.9
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 122 bits (295), Expect = 2e-28
Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GD V+LKGK+RKE+V I++SD++CP+EK+RM DVVSI P P++ YG R
Sbjct: 60 GDAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTR 119
Query: 436 VHILPIDDSVEGLTGNLFEVYLKP---SSWRLTVRSIVTTPSWSAGACAPSSSKWSETDP 606
+H+LPIDD++EGLTGNLF+V+LKP ++R + + T A K ET+P
Sbjct: 120 IHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQ---AAMRTVEFKVVETEP 176
Query: 607 SPFCIVAXD 633
+P CIV+ D
Sbjct: 177 APACIVSPD 185
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/46 (63%), Positives = 39/46 (84%)
Frame = +2
Query: 116 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
K D+LSTAIL+ K +PNRLIV+++ DDNSV+A+SQAKM++L LF
Sbjct: 13 KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLF 58
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 116 bits (280), Expect = 1e-26
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GD+V+LKGK+R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKR
Sbjct: 60 GDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKR 118
Query: 436 VHILPIDDSVEGLTGNLFEVYLKP---SSWRLTVRSIVTTPSWSAGACAPSSSKWSETDP 606
VH+LPIDD++EGLTGNLF+V+L+P ++R + + T A K ETDP
Sbjct: 119 VHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQ---AAMRTVEFKVVETDP 175
Query: 607 SPFCIVAXD 633
+P CIVA D
Sbjct: 176 APACIVAPD 184
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/46 (60%), Positives = 39/46 (84%)
Frame = +2
Query: 116 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LF
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLF 58
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 116 bits (280), Expect = 1e-26
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Frame = +1
Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
GD+V+LKGK+R+ETV IVL+ DNCP++KI+M DVVSI+ ++YGKR
Sbjct: 60 GDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKR 118
Query: 436 VHILPIDDSVEGLTGNLFEVYLKP---SSWRLTVRSIVTTPSWSAGACAPSSSKWSETDP 606
VH+LPIDD++EGLTGNLF+V+L+P ++R + + T A K ETDP
Sbjct: 119 VHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQ---AAMRTVEFKVVETDP 175
Query: 607 SPFCIVAXD 633
+P CIVA D
Sbjct: 176 APACIVAPD 184
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/46 (60%), Positives = 39/46 (84%)
Frame = +2
Query: 116 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
K D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LF
Sbjct: 13 KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLF 58
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 95 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFLVTQSCS 274
L K+ NK+ +DL T LR++ +++ E V+ N AK+E + L ++ C+
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAIYNDLFSRLCN 120
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 95 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFLVTQSCS 274
L K+ NK+ +DL T LR++ +++ E V+ N AK+E + L ++ C+
Sbjct: 61 LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAIYNDLFSRLCN 120
>AF125450-3|AAD12817.1| 309|Caenorhabditis elegans Hypothetical
protein Y39F10A.3 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 130 IIRAFIICHFIQNLLLESKNYYNFY 56
++ AF++C + N+LL SK+ Y FY
Sbjct: 8 LLLAFVVCLTLFNVLLWSKSNYGFY 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,057
Number of Sequences: 27780
Number of extensions: 332727
Number of successful extensions: 932
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -