Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060274.seq
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   125   3e-29
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   125   3e-29
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   120   1e-27
At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta...    30   1.2  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At5g09900.2 68418.m01145 26S proteasome regulatory subunit, puta...    28   4.9  
At5g09900.1 68418.m01144 26S proteasome regulatory subunit, puta...    28   4.9  
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    28   6.5  
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    28   6.5  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    27   8.5  
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    27   8.5  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  125 bits (301), Expect = 3e-29
 Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GDT+L+KGK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKR
Sbjct: 58  GDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKR 117

Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
           VHILP+DD+VEG+TGNLF+ YLKP  +    R +     +   G       K  ETDP+ 
Sbjct: 118 VHILPVDDTVEGVTGNLFDAYLKP-YFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE 176

Query: 613 FCIVAXD 633
           +C+VA D
Sbjct: 177 YCVVAPD 183



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 30/49 (61%), Positives = 39/49 (79%)
 Frame = +2

Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLF
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLF 56


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  125 bits (301), Expect = 3e-29
 Identities = 61/127 (48%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GDT+L+KGK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKR
Sbjct: 58  GDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKR 117

Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
           VHILP+DD+VEG+TGNLF+ YLKP  +    R +     +   G       K  ETDP+ 
Sbjct: 118 VHILPVDDTVEGVTGNLFDAYLKP-YFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAE 176

Query: 613 FCIVAXD 633
           +C+VA D
Sbjct: 177 YCVVAPD 183



 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +2

Query: 107 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLF
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLF 56


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  120 bits (288), Expect = 1e-27
 Identities = 57/127 (44%), Positives = 79/127 (62%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 GDTVLLKGKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKR 435
           GDT+L+KGK+RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYG R
Sbjct: 59  GDTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNR 118

Query: 436 VHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSWSA-GACAPSSSKWSETDPSP 612
           VHILP+DD++EG++GN+F+ YLKP  +    R +     +   G       K  ETDP+ 
Sbjct: 119 VHILPLDDTIEGVSGNIFDAYLKP-YFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAE 177

Query: 613 FCIVAXD 633
           +C+VA D
Sbjct: 178 YCVVAPD 184



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 28/50 (56%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 253
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLF
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLF 57


>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
           putative (RPN5)
          Length = 442

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 131 LSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFLVTQSC 271
           +S A++ + DRP+ +I  + V D N ++      +E+L L LV +SC
Sbjct: 381 VSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKL-LDLVEKSC 426


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 414 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 319
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At5g09900.2 68418.m01145 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 131 LSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFLVTQSC 271
           +S A++ + DRP+ ++  +   D N ++      +E+L L LV +SC
Sbjct: 381 VSKALIAKIDRPSGIVCFQIAKDSNEILNSWAGNLEKL-LDLVEKSC 426


>At5g09900.1 68418.m01144 26S proteasome regulatory subunit,
           putative (RPN5) p55 protein-like
          Length = 442

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 131 LSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFLVTQSC 271
           +S A++ + DRP+ ++  +   D N ++      +E+L L LV +SC
Sbjct: 381 VSKALIAKIDRPSGIVCFQIAKDSNEILNSWAGNLEKL-LDLVEKSC 426


>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 463 LNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRARCK---RF 293
           L++    CG   H S  D  + I   +  H   F+QH    + + G  R R+ C+    +
Sbjct: 262 LSYMCLQCGFAVHCSCVDLPQVININRHDHRISFTQHLGPGYLNCGVCR-RSVCQFNGAY 320

Query: 292 PCGVCP 275
            C VCP
Sbjct: 321 SCLVCP 326


>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 403 APCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPSSWRLTVRSIVTTPSW 555
           AP  S   GKR+ I PIDD +  L  ++  + L   S    +++ V +  W
Sbjct: 23  APRSSDARGKRILIDPIDDRISKLPDDVLVMILASLSTEDALKTSVLSTRW 73


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 245
           ++ +I  L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 81  SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 212
           S NK  I  +IIK   IY P+++ A    + S S   SA TT S
Sbjct: 64  SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,593
Number of Sequences: 28952
Number of extensions: 309311
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)