Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060273.seq
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 29 0.71
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 0.94
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 2.2
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 26 3.8
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 5.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 5.0
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.6
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 6.6
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 8.8
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 8.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 8.8
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.71
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = -1
Query: 553 PSFDAAV-SGXKPFK*PETFFISSSKHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAGV 377
PS+ A S K +K TFF F + PTH F +YL S LI + V
Sbjct: 122 PSYKAKTYSLVKEYK-GTTFF--DGFDFMNITDPTHGFVQYLDRNSSAKLGLISANSSNV 178
Query: 376 GLGRFAVHRHRTARQQ-QAASNEYIEYDFAIASVV 275
+ + H + + R + S +Y E+ I ++
Sbjct: 179 IMAADSKHNYSSGRPSIRLQSTQYFEHGLFILDLI 213
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 0.94
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 378 LVLGDSPSIDTEPPGSSRPPAMSTSNM-TSP*RR*SSFDPAELGTCRLRRDRHRPAPDPV 202
L + PS+D P S PP+ S S +P SS PA R + AP P
Sbjct: 45 LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNR-AYGAAPQPY 103
Query: 201 PERRG 187
P + G
Sbjct: 104 PPQGG 108
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 132 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYK 248
QR K+D+KEK + ++A V+ +E+A L+ A K
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKK 246
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 610 PDWKGNAIRYRIHSCXSCAPS 548
P WK IR R SC +C P+
Sbjct: 247 PQWKHIRIRPRQQSCKACGPN 267
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 352 RHRTARQQQAASNEYIEYDFA 290
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 405 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 304
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 541 AAVSGXKPFK*PETFFISSSKHFFQVLVPTH 449
A +G K F ++S K+FFQ+ + TH
Sbjct: 111 AECNGGKDFTEMTRIYLSIRKNFFQICLKTH 141
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -2
Query: 453 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 301
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 99 SQKVEKPVLSGQRIKTRKRDE 161
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 100 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 219
V+R K + +RPE EM + + LWY WSG
Sbjct: 43 VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -2
Query: 474 FSKYLYRRISFTNTCSKFRMVSISSLAE 391
FS++ Y F NTC F + S E
Sbjct: 463 FSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,611
Number of Sequences: 5004
Number of extensions: 55980
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -