Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060273.seq
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 51 6e-07
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.3
01_06_1226 - 35518981-35519295,35519876-35520745 30 1.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 29 3.9
09_02_0556 + 10637362-10637575,10637728-10637825 29 3.9
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126... 29 3.9
02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318... 28 5.2
12_02_0749 - 22758317-22760407 28 6.8
09_04_0350 + 16899076-16900164 28 6.8
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919 28 6.8
01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309 28 6.8
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 27 9.0
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 51.2 bits (117), Expect = 6e-07
Identities = 29/67 (43%), Positives = 36/67 (53%)
Frame = +3
Query: 72 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKY 251
+L +S+ C EKP L GQRIKTRKR+ DP F DA+VQ GDL+ K
Sbjct: 59 DLFVSLKCSK---EKPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKS 115
Query: 252 LTRPDQN 272
+ D N
Sbjct: 116 IESSDLN 122
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +2
Query: 266 SKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTMRNFEQVFVK 445
S L++ RYG+ F+V+ GG P G++ + E + + + + K
Sbjct: 119 SDLNFSRYGDTFFEVVFIGGRTQP-GTIKPEEEGERHPYSVLDCAAQREAILPSVLYIQK 177
Query: 446 LMRRYKYLEK 475
+RR +L K
Sbjct: 178 TLRRRPFLIK 187
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 360 PSIDTEPPGSSRPPA 316
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 452 ASVSRIPVRNFAWCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGR 321
A +S P F P+ RR+ RC W + + P AAG+
Sbjct: 194 AMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGK 237
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 360 ANRP-RPTPASSPPMRIWTPCEISNRYS*N*CVGTSTWKKCFEEEM 494
AN P RP P S + W P ++++S C+G +KK E+ M
Sbjct: 388 ANPPKRPDPQGSDTKKSWCPIHKTDKHSLEDCIG---FKKSLEKHM 430
>09_02_0556 + 10637362-10637575,10637728-10637825
Length = 103
Score = 28.7 bits (61), Expect = 3.9
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -2
Query: 387 MQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP*R-R*SSFDPAELGTCRLRRDRHRPAP 211
M L L SPS+ + P S P S+ S R PA L L R +
Sbjct: 1 MSSLSLSFSPSLQSSRPPSPLPSTADRSSTPSAVSGRHRRRAPATLAVPPLPRSPSLSSV 60
Query: 210 DPVPERRGNRSGHTSLSHLFFWS*SVDP 127
PV RRG R G + S + VDP
Sbjct: 61 -PVEARRGGRRGDCTASFISIHGADVDP 87
>04_04_0795 -
28111155-28111649,28111747-28112405,28112499-28112635,
28112747-28113093
Length = 545
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 369 PRPTPASSPPMRIWTP-CEISNRYS*N*CVGTSTWKKCFEEEMKKVSGYL 515
P P P S+PP +I +P S+R S +GT + + VSGYL
Sbjct: 12 PTPPPVSTPPSQIQSPAAPASSRASPLRGMGTPNIASPVRKAVASVSGYL 61
>02_05_0903 -
32630190-32630461,32631084-32631470,32631727-32631817,
32632320-32632492,32632671-32632842
Length = 364
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/94 (25%), Positives = 32/94 (34%)
Frame = -3
Query: 587 PLPDPQLPXMRAQL*CRCXGXEAFQVARNLFHFLFETFFPSTCTDASVSRIPVRNFAWCP 408
P P PQL QL G A++ H F ++S S +
Sbjct: 19 PPPPPQLDWDWDQLQLHTLGGGGGDAAQDGIHGAFLPAMRLESPESSSSEAS-SGYLQDA 77
Query: 407 YPHWRRRCRCWSWAIRRPSTPNRPAAAGRQQ*VH 306
HW RC + P RPAAA + +H
Sbjct: 78 VAHWSDRCNKRQRMAEAAAPPRRPAAAAANEDLH 111
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -3
Query: 395 RRRCRCWSWAIRRPSTPNR 339
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 428 RNFAWCPYPHWRRRCRCWSW 369
R W + WR+R CW W
Sbjct: 245 RRRTWRQHGEWRQRSGCWQW 264
>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
Length = 130
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 277 LPTLWRSHIRCTHCWRPAAAGRF 345
LP + + C +C RP AAGRF
Sbjct: 89 LPAVAADLVDCMNCGRPVAAGRF 111
>01_07_0056 - 40787723-40788124,40788236-40788430,40788914-40789309
Length = 330
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 421 SHGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVVE 272
+HG+H+++ DA GR A + R A + S E+ + D A+ VE
Sbjct: 69 THGLHVVLTSRDA--ARGRDATEQIRAAAGKPGVSVEWRQLDVTDAASVE 116
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 228 RHRPAPDPVPERRGNRS 178
R RPAPDPV RG+R+
Sbjct: 12 RRRPAPDPVAVLRGHRA 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,029
Number of Sequences: 37544
Number of extensions: 434400
Number of successful extensions: 1546
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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