Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060273.seq
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 78 7e-15
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 29 3.0
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 4.0
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 7.0
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_9199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7) 27 9.2
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 77.8 bits (183), Expect = 7e-15
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = +2
Query: 254 NSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESP---KTNTCIFSANEDMDTMRN 424
+++G KL+YR YGE +FDVL A PGGS+ DG +P KTN CIF AN D +T+R
Sbjct: 37 DTSGGKLNYRLYGEFLFDVLFAA----PGGSIVEDGPNPSTYKTNICIFEANNDNETLRK 92
Query: 425 FEQVFVKLMRRYKYLEKMF 481
Q+ KL+ RY+YL+K +
Sbjct: 93 HVQMHNKLICRYRYLQKSY 111
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 159 EKEKYDPNGFRDALVQG---LERAGGDLDAAYKYL 254
EKEK+ P GFRDA++ G L G DL+ K+L
Sbjct: 2 EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFL 36
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 268 KTRLPTLWRSHIRCTHCWRPAAAG 339
+ RLP WRS R H W+P+ G
Sbjct: 19 RDRLPFQWRSRARRNHGWKPSLKG 42
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
Frame = +3
Query: 129 GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 218
G++ K RK DEK +K+DP+G LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 394 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 275
G AG G G F H +R R+++ EYIE ASV+
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 372 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAELGT 247
L D+P+ + PP S+ P A ST M+S F PA T
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANTVT 203
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 100 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 222
V R K + RV + + R+R + LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 444 FTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 316
+ + S+ R +++++ ++QV PSI ++PP PPA
Sbjct: 127 YQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 255 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 112
L C + RDR+ P+ R + HT++ +F W S V +I ++
Sbjct: 26 LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 360 PSIDTEPPGSSRPPAMSTSNMTSP*R 283
P D PP S PP +S S+ ++P R
Sbjct: 733 PPPDESPPSSKHPPTVSPSSSSAPPR 758
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 392 SANEDMDTMRNFEQVFVKLMRRYKYLEKMFRRGNEKGFWLL 514
S N DMD + Q KL + K LEK + E W L
Sbjct: 1496 SQNPDMDLLAQHYQQLAKLQKHKKELEKHKQELEELAVWSL 1536
>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -2
Query: 444 FTNT-CSKFRMV--SISSLAEKMQVLVLGD---SPSIDTEPPGSSRPPAMSTS 304
F+NT CS F ++ SI++ K+ V +P + T PP +RPP STS
Sbjct: 377 FSNTNCSTFNILFSSITNPCAKVFVECCNGVTPAPPLGTLPPPGTRPPPPSTS 429
>SB_9199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 72 NLLISIYCMSQKVEKPVLSGQRIKTRKRDEKEKYDPNG 185
NL+ +IYC Q KPV R + RK+ E++ D +G
Sbjct: 18 NLMENIYCSVQNNGKPV--RDRPEQRKKKEEDNDDDSG 53
>SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)
Length = 231
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 352 RHRTARQQQAASNEYIEYDFAIASVV 275
RHRT RQQ AS E + +FA +V
Sbjct: 36 RHRTKRQQNMASLEELSTNFAPPGIV 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,144,590
Number of Sequences: 59808
Number of extensions: 437568
Number of successful extensions: 1330
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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