Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060273.seq
         (619 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    26   1.1  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    24   3.4  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    24   3.4  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    24   3.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   6.0  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    23   6.0  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 521 AFQVARNLFHFLFETFFPS 465
           +F++ RN+ +F+F+T+ PS
Sbjct: 215 SFKLQRNIGYFVFQTYLPS 233


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 457 PTHQFHEYLFEISHGVHILIGGEDAGVGLG 368
           PTHQ H +     HG  +  GG   G G G
Sbjct: 278 PTHQTHHHHHHHQHGGGVGGGGGGGGGGGG 307


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 457 PTHQFHEYLFEISHGVHILIGGEDAGVGLG 368
           PTHQ H +     HG  +  GG   G G G
Sbjct: 278 PTHQTHHHHHHHQHGGGVGGGGGGGGGGGG 307


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 457 PTHQFHEYLFEISHGVHILIGGEDAGVGLG 368
           PTHQ H +     HG  +  GG   G G G
Sbjct: 230 PTHQTHHHHHHHQHGGGVGGGGGGGGGGGG 259


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 249  TCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLF 151
            T   +R R  P P P P   G R+   SL   +
Sbjct: 1116 TSEEQRGRRHPTPSPPPRAVGRRAEVRSLGERY 1148


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 342 PPGSSRPPAMS 310
           PPGS RPP +S
Sbjct: 11  PPGSHRPPGLS 21


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,376
Number of Sequences: 2352
Number of extensions: 14982
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60553008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)