Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060273.seq
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    28   6.1  
AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 417 MVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP 289
           +VS SS      V+    +PS    P  +S  P  STSN T+P
Sbjct: 466 VVSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -2

Query: 363 SPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAELGTCRLRRDRHRPAPDPVPERRGN 184
           SPS    PP + R  + S S   +P R  S          R R      +P P P+R  +
Sbjct: 307 SPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKS 366

Query: 183 RS 178
           RS
Sbjct: 367 RS 368


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 267 DPAELGTCRLRRDRHRPAPDPVPERRGNRSGH 172
           D  E G   LR D   P P+  P +RG R  H
Sbjct: 346 DKGEKGEQGLRGDMGLPGPEGTPGKRGRRGRH 377


>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 112 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 213
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 112 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 213
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 493 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 526


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 112 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 213
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 112 KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVW 213
           KN+Y   N  +  +E  K    R +S   W RVW
Sbjct: 552 KNEYIATNFDQKPRESVKNEHPRLISDDGWSRVW 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,678
Number of Sequences: 27780
Number of extensions: 326020
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)