Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060273.seq
(619 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 26 0.34
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.0
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.0
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 1.0
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 2.4
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 22 4.2
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 5.5
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 5.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.5
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 21 7.3
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 21 7.3
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 25.8 bits (54), Expect = 0.34
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -3
Query: 521 AFQVARNLFHFLFETFFPS 465
+F++ RN+ +F+F+T+ PS
Sbjct: 234 SFKLQRNIGYFVFQTYLPS 252
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.0
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -1
Query: 508 PETFFISSSKHFFQVLVPTHQF 443
P+TFF++ + +F + +++F
Sbjct: 96 PDTFFVNEKQSYFHIATTSNEF 117
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.0
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -1
Query: 508 PETFFISSSKHFFQVLVPTHQF 443
P+TFF++ + +F + +++F
Sbjct: 96 PDTFFVNEKQSYFHIATTSNEF 117
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.2 bits (50), Expect = 1.0
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -1
Query: 508 PETFFISSSKHFFQVLVPTHQF 443
P+TFF++ + +F + +++F
Sbjct: 35 PDTFFVNEKQSYFHIATTSNEF 56
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.0 bits (47), Expect = 2.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 518 FQVARNLFHFLFETFFPST 462
F+ R + H L +TF PST
Sbjct: 193 FRFERQIGHHLIQTFAPST 211
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 96 MSQKVEKPVLSGQRIKT 146
M QK+EKPVLS T
Sbjct: 314 MLQKLEKPVLSSSTTTT 330
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.5
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = +3
Query: 93 CMSQKVEKPVLSGQRIKTRKRDEKE 167
C++ +++ + +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.5
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = +3
Query: 93 CMSQKVEKPVLSGQRIKTRKRDEKE 167
C++ +++ + +R +T++RD+ E
Sbjct: 170 CLAMGMKREAVQEERQRTKERDQSE 194
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/44 (20%), Positives = 20/44 (45%)
Frame = +3
Query: 96 MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 227
+ ++++P+ Q + ++E+Y + AL Q GG
Sbjct: 1640 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1683
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 5.5
Identities = 9/44 (20%), Positives = 20/44 (45%)
Frame = +3
Query: 96 MSQKVEKPVLSGQRIKTRKRDEKEKYDPNGFRDALVQGLERAGG 227
+ ++++P+ Q + ++E+Y + AL Q GG
Sbjct: 1636 LGDRMQRPMKESQENQQNAETQRERYYATIHKVALQQAANTGGG 1679
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 480 FEEEMKKVSGYLKGFXPXTAA 542
FEE K+VS Y+K TA+
Sbjct: 167 FEEIKKEVSSYIKKIGYNTAS 187
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 98 ESEGRKTSIIGSTD 139
ESE R+ S +GST+
Sbjct: 371 ESENRRNSCLGSTE 384
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,695
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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