Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060272.seq
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    27   0.11 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    23   3.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.5  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +1

Query: 181 DHSVLCCVHRHRASHRRCRQEPGGENPNNTIFDAKRLI--GRKFEDATVQADMKHWPFEV 354
           DH  +  +H +  SH   +QEP G   +N  F   RL+       D  + ADM  + +  
Sbjct: 342 DHQAM--LHHNPMSHH-LKQEPSGFTSSNHPFSINRLLPTAESKADIKMYADMHQYGYNT 398

Query: 355 VS 360
           +S
Sbjct: 399 LS 400


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 133 LPAREGGDHRQRPGQQDH 186
           +P R+  DHR RP +  H
Sbjct: 246 IPIRQCDDHRDRPPRHFH 263


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 26  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 67


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R  +T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLASTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 VQNAVIHVPAYFNDSQRQATKDA 555
           +++AV H+P    DS+R   +DA
Sbjct: 63  LRSAVEHIPDLIADSRRLPLRDA 85



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 132 TPTQEYVVPRSIPT 91
           TPT + VV R+IP+
Sbjct: 15  TPTDQRVVTRTIPS 28


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 224 IGDAAKNQVARTPTTQYSMPNVSSDVSSKMLLCKPT*STGLS 349
           +GD  + Q  R   T    PN  +  S+       T STG++
Sbjct: 70  MGDYTQLQPQRLAPTHLQSPNTQTHPSASCKYADSTSSTGVA 111


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 662 PSYPFFGPRPVKAKSQQ 612
           P YPFFG  P     QQ
Sbjct: 366 PGYPFFGGFPNAQLLQQ 382


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,642
Number of Sequences: 336
Number of extensions: 4110
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)