Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060272.seq
         (686 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein...    46   1e-06
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   3.9  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   3.9  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.2  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    24   5.2  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.0  
AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   9.0  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   9.0  

>AY137766-1|AAM94344.1|   78|Anopheles gambiae heat shock protein 70
           protein.
          Length = 78

 Score = 46.0 bits (104), Expect = 1e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 493 NAVIHVPAYFNDSQRQATKDAGTI 564
           +AVI VPAYFNDSQRQATKDAG I
Sbjct: 1   DAVITVPAYFNDSQRQATKDAGAI 24


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 73   NGKSTRSRNRSGYHVLLRWCLPAREGGDHR--QRPG 174
            +GK  RS +   +++LL    P REG  H+  Q PG
Sbjct: 1802 DGKYKRSYSYEPHNLLLSNLFPPREGFHHKAVQLPG 1837


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 588 RRNVFKPEDGTCIFCG 541
           + N F  EDG CI CG
Sbjct: 383 KENFFMREDGYCINCG 398


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 495 CSYSRSRVLQ*LSKTSHKRCRY 560
           CSY+R R  + LSK     CR+
Sbjct: 445 CSYNRFRYRRYLSKIQRNLCRW 466


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 187 SVLCCVHRHRASHRRCRQEPGGENPNNTI 273
           SVL C +  R     C   P G N N ++
Sbjct: 10  SVLGCAYTQRTKCAACLDSPDGMNGNESL 38


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 171 RATGPLRLMLRSQTPSVSSEMPPRTRWREPQQHNIRC 281
           +  G L  +  S + +VSS++PP       +  ++ C
Sbjct: 744 KVAGTLGAVQPSSSEAVSSKLPPTAEPEHSESSDVEC 780


>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 472 YLGKTVQNAVIHVPAYFNDSQRQATKDAGTIF 567
           +LG  +++++ + P Y N+ Q     DA   F
Sbjct: 31  HLGNWIKDSLHNAPTYTNNMQSMYELDAAKFF 62


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 96  ESIWVPRTLALVSSSTGRWRSSPT-TRATGPLRLMLRSQTPSVSSEMPPRTRWREPQQHN 272
           E++W   + A   S T  W+      RAT  L L+   Q P +      +  W   Q+H+
Sbjct: 30  ENLWKFESTAAPESLTETWKEGDAKARATIAL-LVDDCQHPLIRDCKTAKGTWDALQKHH 88

Query: 273 IRCQTSHRT*VRRCYCASRHE 335
            +   S +  + +  C + ++
Sbjct: 89  QKTTMSTKVSLLKKLCKAEYD 109


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,152
Number of Sequences: 2352
Number of extensions: 17724
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)