Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060271.seq
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    28   1.0  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    28   1.3  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    27   3.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   3.1  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   7.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   7.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   9.4  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 138 NLDNCRSTNIVGLTDEYTNLQILSLN-NVGLTTLKGFPTLLCSEN 269
           +L N  S ++V L D      + S+N N   TT K FP ++C EN
Sbjct: 356 DLSNALSVSMVRLVD-ILKFSVESVNRNQHNTTSKPFPRIMCKEN 399


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 260  LRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKDLETLKPLE 391
            +R LEL++ ++     +++     L  L+LS N I D+E+LKPL+
Sbjct: 869  VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQ 913


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 160 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 41
           +LLQ   ++++ C G+  L S  + +   + IP  TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 226 RPTLLRLSICKFVYSSVKPTMFVLL 152
           RP + RL   KF YSS++ T+F L+
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALV 131


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 238 LSVVRPTLLRLSICKFVYSSVKPTMFVL 155
           +S V P        KFV SS+KPT+ VL
Sbjct: 642 ISAVPPAEYASRFYKFVESSIKPTLLVL 669


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 247 GKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSR-FSSFTCEGSLPLRSKMILFSMF 74
           G  +  V   LL L  C F++ ++KP +++L   +R       E  + +   M+L S F
Sbjct: 218 GSGVRAVYILLLALGWCLFLFIAIKPLVYLLAVKTRSLKDKPSESFICIVLSMVLVSAF 276


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = -2

Query: 250  VGKPLSVVRPTLLRLSICKFVYSSVKPTMFVLLQLSRFSSF---TCEGSLPLRSKMILF- 83
            V  P S+++ TL    + KF  S  +P   +     ++ +    +  G LP++SKM+L+ 
Sbjct: 757  VDNPDSMLKSTLKYRFVFKF--SPSQPLSSLGKNKEKYDALLERSSHGVLPVQSKMLLYN 814

Query: 82   SMFINIPINTLNNFRFANKLFLKEPRA 2
            S  I+ P++++       K  +   RA
Sbjct: 815  SNHISCPLSSIKGVSVNGKRLVYTSRA 841


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 79  WKRGSSWNAEGGI 117
           WKR  +WN E G+
Sbjct: 124 WKRNKAWNTENGL 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,138
Number of Sequences: 5004
Number of extensions: 44515
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)