Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060271.seq
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08) 106 2e-23
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 36 0.038
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36) 35 0.066
SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12) 31 0.81
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08) 31 0.81
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3) 29 2.5
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017) 28 7.5
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14) 28 7.5
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0) 27 9.9
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20) 27 9.9
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
Length = 219
Score = 106 bits (254), Expect = 2e-23
Identities = 58/117 (49%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Frame = +2
Query: 221 GSHNTQRFSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLEAXX 400
G + F LRKLELSDNRIS+GL L+G KL HL+LSGNKIKDLETL+PLE
Sbjct: 49 GLTTLKNFPKLPNLRKLELSDNRISSGLQNLTGSPKLTHLSLSGNKIKDLETLEPLEKLS 108
Query: 401 XXXXXXXXXXXVTSIEDYKSKVFAMHPSLKYLDGFDSXTKKLMTVDI---EEEDEMN 562
VT+++DYK+KVF + PSL+YLDG D + D E+ DE+N
Sbjct: 109 NLKSLDLFNCEVTNVDDYKNKVFELIPSLRYLDGCDKEGNEAEETDSTGDEDGDEVN 165
Score = 68.5 bits (160), Expect = 4e-12
Identities = 34/52 (65%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 RGRDPSQ--VKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTL 254
RG P+ + EL LDNCRST+IVGLTDE+ L+ILS+ NVGLTTLK FP L
Sbjct: 8 RGSKPAARPITELILDNCRSTSIVGLTDEFVKLEILSMINVGLTTLKNFPKL 59
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 35.5 bits (78), Expect = 0.038
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +2
Query: 257 MLRKLELSDNRISNG--LTFLSGCKKLAHLNLSGNKIKDLETLKPL-EAXXXXXXXXXXX 427
+L L+++ NR+++ + L+ C+KL+ ++LS NKI D + L E
Sbjct: 79 VLNTLQIAHNRLASAGDIKELASCQKLSIVDLSYNKIDDPNIVDVLAEMPNLSVLNLIGN 138
Query: 428 XXVTSIEDYKSKVFAMHPSLKYLD 499
+ I++Y+ + +LKYLD
Sbjct: 139 PVIKKIKNYRKNMILKLKNLKYLD 162
>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
Length = 852
Score = 34.7 bits (76), Expect = 0.066
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +2
Query: 236 QRFSDAAMLRKLELSDNRISN---GLTFLSGCKKLAHLNLSGNKIKDLETL 379
Q ++ L+KL+LS+NRI++ G+ L+ L LNLSGN I +++TL
Sbjct: 615 QEYNKTFTLQKLDLSNNRITSVPVGMPCLA--TSLQTLNLSGNNISEVKTL 663
>SB_47414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 257 MLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKD 367
+L+ L+LS+N++ L+ C KL LNL N IKD
Sbjct: 179 VLKVLDLSENKLEAIPCELADCLKLKDLNLKENPIKD 215
>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
Length = 481
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 251 AAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLE 391
A L L L +N+IS + L C++L+ L L GN I +E L LE
Sbjct: 72 AGNLTHLYLQNNKISR-IEGLDHCRRLSKLYLGGNSITVIEGLDKLE 117
>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
Length = 535
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 FSDAAMLRKLELSDNRISN-GLTFLSGCKKLAHLNLSGNKIK 364
F + ++ L L+DN + G LSG K L +LNL+ NK++
Sbjct: 46 FRGFSNVKNLTLADNDLEEIGNASLSGLKSLLYLNLANNKLR 87
>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 257 MLRKLELSDNRISNGLTFLS---GCKKLAHLNLSGNKIKD 367
+L ++LS N +SN S G K + H+NLS NK+ D
Sbjct: 471 LLEHIDLSRNNLSNWTRMTSTFDGLKSIKHINLSANKMCD 510
>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 44 VVQSVNWYIYEHGKEDHLGTQREGSFTGERT 136
++ V++Y Y H +D LG EG T ERT
Sbjct: 25 LILGVSFYRYYHNSKDLLGKFNEGILTNERT 55
>SB_40605| Best HMM Match : Prion_octapep (HMM E-Value=9.3)
Length = 586
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 196 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 110
+F +++ KPT V+L F+ F C+G L
Sbjct: 2 EFAHNATKPTRSVMLYTEFFNQFDCDGDL 30
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 196 KFVYSSVKPTMFVLLQLSRFSSFTCEGSL 110
+F +++ KPT V+L F+ F C+G L
Sbjct: 60 EFAHNATKPTRSVMLYPEFFNQFDCDGDL 88
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 242 FSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLE 373
F+ + L L+LS NRIS G KL LNL N++ ++
Sbjct: 105 FNRLSSLEVLKLSKNRISTIRGAFWGQNKLQQLNLERNRLSHIQ 148
>SB_46153| Best HMM Match : LRR_1 (HMM E-Value=0.0017)
Length = 391
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 260 LRKLELSDNRISNGLTF--LSGCKKLAHLNLSGNKIKDL 370
L L+LS N G +F LS KLA LNLS +KD+
Sbjct: 183 LSTLDLSQNPKITGHSFKYLSKLTKLASLNLSATGVKDV 221
>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
Length = 829
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 135 LNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTL-KGFPTLLCSENWNCQ 281
L+L+NC T+I + +L+ L LNN LT++ G L N N +
Sbjct: 527 LSLENCNLTSIPDVVFHLESLEKLDLNNNKLTSIPAGITNLTKLTNLNLE 576
>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 260 LRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKI 361
L+KL+LS NRI + + L LNL+ NKI
Sbjct: 487 LKKLDLSRNRIKSIPAQIEELSNLETLNLASNKI 520
>SB_59316| Best HMM Match : LRR_1 (HMM E-Value=0)
Length = 680
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 242 FSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 370
F+ L +L L++N + L KL LNL+GNK++ L
Sbjct: 82 FARLGNLTELHLNENSLEELPESLGKLSKLRVLNLTGNKLEKL 124
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 236 QRFSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDL 370
+ F A L KL LS NR+ + + +L L L GNKI ++
Sbjct: 102 KEFGSLAKLEKLNLSGNRLESFGPSIFRLTQLKVLLLGGNKINNV 146
>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
Length = 681
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 236 QRFSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKI 361
+ S LR L L+ N I + +SG + LA LNL NKI
Sbjct: 245 ENLSHLTELRVLNLAGNEILK-VCNISGMRSLAELNLRRNKI 285
>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1437
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +3
Query: 99 ERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGFPTLLCSENWNC 278
+R P+ +L+L N S N + +E L+I + N + +G PT ++ NC
Sbjct: 730 QRHTDSPTPPLQLDLPNHLSNNFDAVEEE---LKIEPVENHVVIKTEGLPTSPRGDSLNC 786
Query: 279 QTIE 290
Q +E
Sbjct: 787 QLLE 790
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,867
Number of Sequences: 59808
Number of extensions: 311739
Number of successful extensions: 954
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -