Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060271.seq
         (647 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           29   0.13 
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            28   0.29 
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    26   1.2  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   6.3  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 242 FSDAAMLRKLELSDNRIS----NGLTFLSGCKKLAHLNLSGNKIKDLET 376
           FS    L+ L+LS N+++    N  TF +G  +L  LNL+ NKI  LE+
Sbjct: 338 FSKLEQLQALDLSQNQLTSAWVNRDTF-AGLIRLVLLNLASNKITKLES 385



 Score = 28.7 bits (61), Expect = 0.17
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 260 LRKLELSDNRISN-GLTFLSGCKKLAHLNLSGNKIKDLET 376
           L+ L++ DN IS  G   LSG  +L  L+LS NK+  L T
Sbjct: 271 LKMLKIHDNEISMVGDKALSGLNELQILDLSSNKLVALPT 310



 Score = 24.2 bits (50), Expect = 3.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +2

Query: 224 SHNTQRFSDAAMLRKL-ELS----DNRISNGL--TFLSGCKKLAHLNLSGNKI 361
           SHN  ++ DA  L  L  LS    DN    G+       C  L  LNL+GN++
Sbjct: 424 SHNKLKYLDAYSLNGLYALSLLSLDNNALTGVHPEAFRNCSSLQDLNLNGNEL 476



 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 242 FSDAAMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLE 373
           F  A  ++ + L  N +S+    L+    L  LN+S NK++  +
Sbjct: 555 FEPAVSVQAIRLDGNLLSDIDGLLTSMPNLVWLNISDNKLEHFD 598


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 27.9 bits (59), Expect = 0.29
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +2

Query: 245 SDAAMLRKLELSDNRI-SNGLTFLSGCKKLAHLNLSGNKIKDL 370
           ++ + L++L+LS N + S    F+    +L++LNL+ N+++DL
Sbjct: 149 NELSKLQRLDLSQNNMWSVPDGFICPLARLSYLNLTQNRLRDL 191


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = +2

Query: 62  WYIYEHGKEDHL--GTQRE 112
           WY+YE   EDHL  G  RE
Sbjct: 31  WYVYERCHEDHLPSGPNRE 49


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 345 RFKCASFLQPLRKVSPFDILLSDSSNFLSI 256
           +F+     QP  +VSP+D++L   ++ +S+
Sbjct: 579 KFRLQLVGQPRVEVSPYDVVLQGGNSSISL 608


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,086
Number of Sequences: 2352
Number of extensions: 10450
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)