Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060271.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.068
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 0.068
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 248 DAAMLRKLELSDNRISNGLT-FLSGCKKLAHLNLSGNKIKDL 370
           D A+L+ L+L +NRISN          +L  L L GN I +L
Sbjct: 452 DLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNL 493



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +3

Query: 66  IFMNMEKRIILERRGRDPSQVKELNLDNCRSTNIVGLTDEYTNLQILSLNNVGLTTLKGF 245
           +   ++  + + R+      V    +++ ++    GL     NLQIL L +  +  LKGF
Sbjct: 805 VLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLN----NLQILHLEDNRIRELKGF 860


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 440 SIEDYKSKVFAMHPSLKYLD-GFDSXTKKLMTVDIEEEDEMN 562
           S+ D+K+ +F +    KY D  F S  K+   +   E +  N
Sbjct: 23  SLRDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKN 64


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 225 LTTLKGFPTLLCSENWN 275
           L  LK FPT    E WN
Sbjct: 450 LPVLKNFPTRYIHEPWN 466


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 451 VFNASNIIIE*VKI-LQILESFKRLQGF 371
           + N S+I+ E  +  LQ+LESFKR   F
Sbjct: 281 LINCSDILEEFERNRLQLLESFKRKVNF 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,054
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)