Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060270.seq
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 160 1e-40
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 150 2e-37
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 150 2e-37
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 149 2e-37
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 149 2e-37
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 91 8e-20
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 2e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 5e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 5e-05
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 1.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 4.3
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.3
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 7.5
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 10.0
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 10.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 10.0
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 160 bits (388), Expect = 1e-40
Identities = 77/81 (95%), Positives = 80/81 (98%)
Frame = +1
Query: 256 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 435
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
Query: 436 SXYNIQKESTLHLVLRLRGGM 498
S YNIQKESTLHLVLRLRGGM
Sbjct: 133 SDYNIQKESTLHLVLRLRGGM 153
Score = 160 bits (388), Expect = 1e-40
Identities = 77/81 (95%), Positives = 80/81 (98%)
Frame = +1
Query: 256 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 435
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
Query: 436 SXYNIQKESTLHLVLRLRGGM 498
S YNIQKESTLHLVLRLRGGM
Sbjct: 209 SDYNIQKESTLHLVLRLRGGM 229
Score = 160 bits (388), Expect = 1e-40
Identities = 77/81 (95%), Positives = 80/81 (98%)
Frame = +1
Query: 256 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 435
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284
Query: 436 SXYNIQKESTLHLVLRLRGGM 498
S YNIQKESTLHLVLRLRGGM
Sbjct: 285 SDYNIQKESTLHLVLRLRGGM 305
Score = 159 bits (385), Expect = 3e-40
Identities = 76/81 (93%), Positives = 80/81 (98%)
Frame = +1
Query: 256 LRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 435
LRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 301 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360
Query: 436 SXYNIQKESTLHLVLRLRGGM 498
S YNIQKESTLHLVLRLRGG+
Sbjct: 361 SDYNIQKESTLHLVLRLRGGL 381
Score = 151 bits (367), Expect = 5e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLS YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 448 IQKESTLHLVLRLRGGM 498
IQKESTLHLVLRLRGGM
Sbjct: 61 IQKESTLHLVLRLRGGM 77
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 61 IQKESTLHLVL 71
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 137 IQKESTLHLVL 147
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 213 IQKESTLHLVL 223
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 289 IQKESTLHLVL 299
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 365 IQKESTLHLVL 375
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 150 bits (363), Expect = 2e-37
Identities = 72/77 (93%), Positives = 76/77 (98%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLS YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 448 IQKESTLHLVLRLRGGM 498
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 61 IQKESTLHLVL 71
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 150 bits (363), Expect = 2e-37
Identities = 72/77 (93%), Positives = 76/77 (98%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLS YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 448 IQKESTLHLVLRLRGGM 498
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 61 IQKESTLHLVL 71
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (362), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLS YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 448 IQKESTLHLVLRLRGG 495
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 61 IQKESTLHLVL 71
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 149 bits (362), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLS YN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 448 IQKESTLHLVLRLRGG 495
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 141 bits (341), Expect = 7e-35
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 221 IQKESTLHLVL 253
IQKESTLHLVL
Sbjct: 61 IQKESTLHLVL 71
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 91.5 bits (217), Expect = 8e-20
Identities = 40/76 (52%), Positives = 56/76 (73%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 448 IQKESTLHLVLRLRGG 495
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 87.0 bits (206), Expect = 2e-18
Identities = 37/71 (52%), Positives = 53/71 (74%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 221 IQKESTLHLVL 253
++ S LHLVL
Sbjct: 61 LEGGSVLHLVL 71
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 68 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 241
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 295 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYNIQKESTL 468
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +1
Query: 268 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYN 447
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 448 IQKESTLHLVLRL 486
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 220
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 221 IQKESTLHLV 250
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/54 (33%), Positives = 34/54 (62%)
Frame = +1
Query: 298 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYNIQKE 459
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +2
Query: 41 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 217
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 218 NIQKE 232
NI+++
Sbjct: 61 NIKEQ 65
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 177 LASSWKTDAPCQTTTFKKNPHSIWYCSSWR 266
L SW P T F+K+ H++ Y WR
Sbjct: 1432 LEDSWDRGIPRINTLFQKDRHTLAYDKGWR 1461
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.3
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +2
Query: 44 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 217
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 218 NIQKESTLHLVL 253
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
Score = 25.0 bits (52), Expect = 7.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 271 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS--XY 444
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 445 NIQKESTLHLVL 480
+ T HLV+
Sbjct: 65 DATDLVTFHLVI 76
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 205 GASVFQLLASKDETLL-IRRNSFFVLDLRLYILNCVRRFHF*CDGLAS 65
G + L++ ++ +++ + R F + D + NC+ FH+ C GL+S
Sbjct: 1441 GLNSSHLVSDQNASVICLCRQPFAISDGTVQCHNCLEWFHYECVGLSS 1488
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 210 QTTTFKKNPHSIWYCSSWRNADLRENSDRKDH 305
Q + +PH + YC+ + N +++ + DH
Sbjct: 6 QNNCSEVDPHVLSYCTGYANDAIKDVDEASDH 37
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 215 YNIQKESTLHLVLLFVEECRSS 280
Y I+ +T HL+ F E CR +
Sbjct: 1557 YTIESNTTAHLLCQFEEACRQA 1578
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 10.0
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = +1
Query: 289 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSXYNIQKE 459
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 460 STLH 471
LH
Sbjct: 154 QVLH 157
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 50 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 145
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,355
Number of Sequences: 5004
Number of extensions: 48006
Number of successful extensions: 160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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