Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060270.seq
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.097
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.5 bits (58), Expect = 0.097
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 325 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSXYNIQKE 459
           +DT+   K KI  K  I PD + L+   KQ E G TL    I  +
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTLVVQEISSD 775



 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 98  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 163 LLIRRNSFFVLDLRLYILNC 104
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 390 LLIRRNSFFVLDLRLHILNC 331
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 394 LIFAGKQLEDGRTLSXYNIQKESTLHLVLRLRGGM*FHNNLFLKNKKIHS 543
           LI  G  +E+    +   I  +     + R + G+  + N FLKN +  S
Sbjct: 40  LISNGDYIEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESES 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 84  NVMVLPVRVFTKICMMIL 31
           N+  + +R+F  ICMM+L
Sbjct: 271 NMASVFMRIFNLICMMLL 288


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 84  NVMVLPVRVFTKICMMIL 31
           N+  + +R+F  ICMM+L
Sbjct: 239 NMASVFMRIFNLICMMLL 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,055
Number of Sequences: 438
Number of extensions: 2994
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)