Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P12827 Cluster: Early 25.9 kDa protein; n=5; Nucleopoly...   167   3e-40
UniRef50_O92383 Cluster: Orf_7a; n=3; Nucleopolyhedrovirus|Rep: ...    46   8e-04
UniRef50_O10276 Cluster: Putative early 21.8 kDa protein; n=8; N...    36   0.67 
UniRef50_A2EJW1 Cluster: SH3 domain containing protein; n=1; Tri...    36   1.2  
UniRef50_Q4SDJ5 Cluster: Chromosome 18 SCAF14637, whole genome s...    35   2.1  
UniRef50_A0UXD3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q22DA0 Cluster: EF hand family protein; n=1; Tetrahymen...    33   6.3  
UniRef50_A2F1N8 Cluster: Beige/BEACH domain containing protein; ...    33   6.3  
UniRef50_A7IXT0 Cluster: Putative uncharacterized protein b755R;...    33   8.3  
UniRef50_Q5NLW7 Cluster: Ubiquinone biosynthesis protein; n=2; S...    33   8.3  
UniRef50_Q4Q9A1 Cluster: Putative uncharacterized protein; n=3; ...    33   8.3  

>UniRef50_P12827 Cluster: Early 25.9 kDa protein; n=5;
           Nucleopolyhedrovirus|Rep: Early 25.9 kDa protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 225

 Score =  167 bits (405), Expect = 3e-40
 Identities = 93/177 (52%), Positives = 107/177 (60%)
 Frame = +2

Query: 32  MNSVHTRLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVASVIPKNYQEKRQKICHI 211
           M SV TRLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTV SVIPKNYQEKRQKICHI
Sbjct: 1   MESVQTRLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVTSVIPKNYQEKRQKICHI 60

Query: 212 ISSLRNTHLNFNKIRLYXXXXXXXXXXXXXXXXXLLPSWLENSKVHRRRRRQRTEILVVN 391
           ISSLRNTHLNFNKI+                   ++   +   +  +++   R      +
Sbjct: 61  ISSLRNTHLNFNKIQSVHKKKLRHLQNLLRKKNEIIAELVRKLESAQKKTTHRNISKPAH 120

Query: 392 RLLIGNTLEWSDVTTQFAQLLATKSL*GDVWPSCAHCQREYVFCQARADGDKDRQAL 562
               G     + + T        +    ++   C     EYVFCQARADGDKDRQAL
Sbjct: 121 WKYFGVVRCDNTIRTIIGNEKFVRRRLAEL---CTLYNAEYVFCQARADGDKDRQAL 174



 Score =  156 bits (378), Expect = 5e-37
 Identities = 89/121 (73%), Positives = 90/121 (74%), Gaps = 1/121 (0%)
 Frame = +1

Query: 310 EIIAELVRKLESAQKKTTTTHRNISSKPAAHWKYFGVVRCDNTIRTIIGNEKFVRRRLAE 489
           EIIAELVRKLESAQKKTT  HRNIS KPA HWKYFGVVRCDNTIRTIIGNEKFVRRRLAE
Sbjct: 94  EIIAELVRKLESAQKKTT--HRNIS-KPA-HWKYFGVVRCDNTIRTIIGNEKFVRRRLAE 149

Query: 490 LCTLSTRVRVLPGTRRWRQRS-TGTTSLLRQRLVPRVIXYENSRRXEFINPDEIASGKRL 666
           LCTL     V    R    +      SLL      RVI YENSRR EFINPDEIASGKRL
Sbjct: 150 LCTLYNAEYVFCQARADGDKDRQALASLLTAAFGSRVIVYENSRRFEFINPDEIASGKRL 209

Query: 667 I 669
           I
Sbjct: 210 I 210


>UniRef50_O92383 Cluster: Orf_7a; n=3; Nucleopolyhedrovirus|Rep:
          Orf_7a - Bombyx mori nuclear polyhedrosis virus (BmNPV)
          Length = 53

 Score = 46.0 bits (104), Expect = 8e-04
 Identities = 18/19 (94%), Positives = 19/19 (100%)
 Frame = +1

Query: 7  EVQRRKHRNEFCSHALMCQ 63
          +VQRRKHRNEFCSHALMCQ
Sbjct: 35 DVQRRKHRNEFCSHALMCQ 53


>UniRef50_O10276 Cluster: Putative early 21.8 kDa protein; n=8;
           Nucleopolyhedrovirus|Rep: Putative early 21.8 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 197

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 328 VRKLESAQKKTTTTHRNISSKPAAH--WKYFGVVRCDNTIRTIIGNEKFVRRRLAELC 495
           VR ++   +K  +   N++++       K+F V    N I T  G+E+FVR+R+ ELC
Sbjct: 67  VRNMQKLIRKKNSVIANLAARLTTQKKTKHFAVTIRKNVIHTTSGSEQFVRQRVLELC 124


>UniRef50_A2EJW1 Cluster: SH3 domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: SH3 domain containing
            protein - Trichomonas vaginalis G3
          Length = 1555

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 462  KVCKETFGRAVHIVNASTCFA-RHAPMETKIDRHYESAAAAFGP 590
            K  +E F   V I+N +   A RH P    +D+ YESA AAFGP
Sbjct: 1499 KQLRECFSETVRILNKAMVVAGRHVP--PGMDKKYESAVAAFGP 1540


>UniRef50_Q4SDJ5 Cluster: Chromosome 18 SCAF14637, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
           SCAF14637, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 242

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +1

Query: 313 IIAELVRKLESAQKKTTTTHRNISSKPAAHW----KYFGVVRCDNTIRTIIGNEKFVRRR 480
           +I EL R + S+    T      S KP  HW      FG  RC+N     +G    +   
Sbjct: 94  LITELKRDIASSSLTLTPDVNQCSRKPTGHWCPFVFVFGSARCENPRVFKLGLVSGIWWA 153

Query: 481 LAELCTLSTRV 513
           LA LC +S R+
Sbjct: 154 LALLCWISDRI 164


>UniRef50_A0UXD3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium cellulolyticum H10|Rep: Putative
           uncharacterized protein - Clostridium cellulolyticum H10
          Length = 368

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 657 AASNLVRIYKLXPATIFIXYDSRDQTLPQQTRSACRSLSPSARAWQNTYS 508
           A  N+V  +KL P      +   D+T     R  CR L+     WQN ++
Sbjct: 78  ALINIVEKFKLRPLVFHNDHGYEDETATDNVRKLCRELNVDMILWQNDFT 127


>UniRef50_Q22DA0 Cluster: EF hand family protein; n=1; Tetrahymena
            thermophila SB210|Rep: EF hand family protein -
            Tetrahymena thermophila SB210
          Length = 2860

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 29   EMNSVHTRLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVASVIPKNYQEKRQKICH 208
            ++NS    +  S NQ     KRQ ++  G++    + I   T+  + P +Y    ++  H
Sbjct: 2464 DLNSQFNDIQKSQNQSRSSSKRQKSISFGNLPKSKNNIQFQTLDGLTPNDYSSDEKQQSH 2523

Query: 209  IISSLRNTH-LNFNKIRL 259
            +   +   H +  NKI L
Sbjct: 2524 VKKKVTTPHSVKVNKIDL 2541


>UniRef50_A2F1N8 Cluster: Beige/BEACH domain containing protein;
           n=1; Trichomonas vaginalis G3|Rep: Beige/BEACH domain
           containing protein - Trichomonas vaginalis G3
          Length = 2220

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -1

Query: 599 MTRGTKRCRSRLVVPVDLCLHRRV--PGKTRTRVDNVHSSAKRLLTNFSLPIIV 444
           M RG  R  ++ ++PV L L  ++  P K    +D++ S    LLT+FS+P ++
Sbjct: 334 MIRGIARVDTKFIIPVFLLLVDKIVPPHKGGILIDSIISFLLELLTDFSMPEVL 387


>UniRef50_A7IXT0 Cluster: Putative uncharacterized protein b755R;
           n=2; Chlorovirus|Rep: Putative uncharacterized protein
           b755R - Paramecium bursaria Chlorella virus NY2A
           (PBCV-NY2A)
          Length = 97

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 26/76 (34%), Positives = 39/76 (51%)
 Frame = -2

Query: 298 LANFANAAVSFYVQTYLIEIQVRVTQRRYYVAYFLAFFLIIFWNHTGNSGRSDGVRQTVH 119
           + NFAN +V   V++Y+      +     YV  F  FF+    + +  SG S+ VR T  
Sbjct: 1   MINFANCSV---VRSYIFPCFFAL---HLYVVGFGLFFVYSECHISSLSGYSNVVRYTAC 54

Query: 118 RTDRHGKLALFERSKL 71
            T+  G +ALFER +L
Sbjct: 55  NTNVLGSMALFERLQL 70


>UniRef50_Q5NLW7 Cluster: Ubiquinone biosynthesis protein; n=2;
           Sphingomonadaceae|Rep: Ubiquinone biosynthesis protein -
           Zymomonas mobilis
          Length = 185

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 462 KVCKETFGRAVHIVNASTCFARHAPMETKIDRHYESAAAAFGPASHXL*K 611
           K+     G A  ++   T  A  A +E++ID HY+S     G   H L K
Sbjct: 88  KIAGFALGAATALIGPKTAMACTAAVESEIDEHYKSQMEKLGSEDHELKK 137


>UniRef50_Q4Q9A1 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 689

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 50  RLCASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVASVIPK 175
           R  ++ NQF P + RQLA+ +G      HT+ S T +S +PK
Sbjct: 643 REVSTDNQFIPLRTRQLALEMGLDKRDLHTVASITKSS-LPK 683


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,190,695
Number of Sequences: 1657284
Number of extensions: 12145893
Number of successful extensions: 35599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 34409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35570
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)