Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   0.56 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    25   0.56 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    23   2.3  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    23   2.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.3  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.9  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 522 ARHAPMETKIDRHYESAAAAFGPAS 596
           AR  P  +    H+++AAAAFG A+
Sbjct: 58  ARMYPYVSAAHHHHQAAAAAFGAAA 82


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 522 ARHAPMETKIDRHYESAAAAFGPAS 596
           AR  P  +    H+++AAAAFG A+
Sbjct: 58  ARMYPYVSAAHHHHQAAAAAFGAAA 82


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 534 PMETKIDRHYESAAAAFGPAS 596
           P  +    H+++AAAAFG A+
Sbjct: 3   PYVSAAHHHHQAAAAAFGAAA 23


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 534 PMETKIDRHYESAAAAFGPAS 596
           P  +    H+++AAAAFG A+
Sbjct: 3   PYVSAAHHHHQAAAAAFGAAA 23


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 408  FPMSSRFTTNISVRCRRLLLCTF 340
            FP   R   N+ + C  L LC F
Sbjct: 1117 FPSKIRICWNVLLNCVYLFLCGF 1139


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 HTITSTTVASVIPKNY 181
           H I  T VA V+P NY
Sbjct: 96  HNIEITEVAPVLPGNY 111


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 HTITSTTVASVIPKNY 181
           H I  T VA V+P NY
Sbjct: 329 HNIEITEVAPVLPGNY 344


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 HTITSTTVASVIPKNY 181
           H I  T VA V+P NY
Sbjct: 329 HNIEITEVAPVLPGNY 344


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 SVNSLTHTITSTTVASVIPKNYQEKR 193
           S +S THT +  T  S + K   EK+
Sbjct: 387 STSSSTHTSSQQTSDSFLSKRNSEKK 412


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,665
Number of Sequences: 336
Number of extensions: 3115
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)