Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   1.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   5.7  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.5  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   7.5  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    25   9.9  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 347  HRRRRRQRTEILVVNRLLIGNTLEWSDVT 433
            H RR  +R    VVN   +GNT  ++ VT
Sbjct: 1264 HTRRNGERNRFSVVNGCFLGNTYAFASVT 1292


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 116 SVNSLTHTITSTTVASVIP 172
           S  + TH++TST + S++P
Sbjct: 53  STETSTHSVTSTNITSIVP 71


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 450 NCANCVVTSDHSKVFPMS 397
           NC NC+V  D   V P+S
Sbjct: 194 NCENCLVIDDELNVLPIS 211


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 627 LXPATIFIXYDSRDQTLPQQTRSA 556
           L  A IF+  D  D TLP++ R+A
Sbjct: 620 LSEADIFVDTDKSDNTLPKKIRNA 643


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 100 KLALFERSKLVATGT*ARVNRIHFDVF 20
           +LA  ER KL+         + HFDVF
Sbjct: 381 QLAFVERCKLIVNDALILAKKFHFDVF 407


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 322 ELVRKLESAQKKTTTTHRNISSKPAAHWKYFGVV 423
           ++V  + SAQ++    +  +SS  A  +K FG+V
Sbjct: 265 DIVSNIGSAQREIVKFYERMSSNRALLFKIFGIV 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,751
Number of Sequences: 5004
Number of extensions: 52519
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)