Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556...    28   7.8  

>01_01_0717 -
           5559414-5559435,5559589-5559764,5559876-5559917,
           5560039-5560080,5560268-5560370,5560466-5560527,
           5561638-5561719,5567067-5567353,5568085-5568184,
           5568584-5568651,5569819-5569860,5570001-5570032,
           5572616-5572652
          Length = 364

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 137 TITSTTVASVIPKNYQEKRQKICHIISSLRNTH 235
           T  S TVA V  ++YQ++  K+   ISSL+N +
Sbjct: 204 TSNSGTVAEVNAQHYQQESSKLRQQISSLQNAN 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,158,746
Number of Sequences: 37544
Number of extensions: 343048
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)