Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_16556| Best HMM Match : IRK (HMM E-Value=0.87)                      29   4.5  
SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)                        29   4.5  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   6.0  

>SB_31768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 516 TYSR*QCAQLGQTSPYKLFVANNCANCVVTSDHSKVFPMSSRFT 385
           T++  QC +L    P+K+  ++ CA C V       +P ++R+T
Sbjct: 469 TWNNIQCPRLDCPKPFKMHPSDCCAQCPVCKFGQNTYPNNARWT 512


>SB_16556| Best HMM Match : IRK (HMM E-Value=0.87)
          Length = 313

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
 Frame = -2

Query: 190 FFLIIFWNHTGNSGRSDGVRQTVHRTDRHG-------KLALFERSKLVATGT*ARVNRI 35
           +FL+ F  +TG+S R  G   T  + +R         K AL E+ K V TGT    N I
Sbjct: 173 YFLLYFLQYTGSSSRHFGRSATERQQNRRSYYSHERTKEALQEQKKTVITGTCHTFNSI 231


>SB_8444| Best HMM Match : BRE (HMM E-Value=6.4)
          Length = 502

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 56  CASSNQFAPFKKRQLAVPVGSVNSLTHTITSTTVASVIPKN 178
           C++SNQ      R  A  +G++  LTH +T T V     +N
Sbjct: 146 CSTSNQQRKGLIRNNAAGIGTLYDLTHHVTRTNVVRTTVRN 186


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
 Frame = +1

Query: 337 LESAQKKTTTTHRNISS----KPAAHWKYFGVVR-CDNTIRTIIGNEKFVRRRLAELCTL 501
           + +A + TT THRNIS       A   K F  +R    T R   GN        A   T+
Sbjct: 131 ISTASRTTTPTHRNISETGLRTSATSRKTFSNIRPTSETSRKTSGNS---GTTTAVSLTI 187

Query: 502 STRVRVLP-GTRRWRQRSTGT-TSLLRQRLVP 591
           S   R LP  TR + + S  + +SL+  R +P
Sbjct: 188 SVSSRKLPTSTRTYIKSSEASRSSLIPSRTMP 219


>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 396 CSLEILWSGQM*QHNS-HNYWQRKVCKETFGRAVHIVNAS-TC 518
           C+  + W G+  Q    HN W    CKE   R ++  N S TC
Sbjct: 241 CNCTVGWIGKFCQQTCPHNTWGEGYCKEECPRGIYGRNCSYTC 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,395,775
Number of Sequences: 59808
Number of extensions: 412652
Number of successful extensions: 1291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)