Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060269.seq
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical pr...    32   0.43 
Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical p...    32   0.43 
DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.      32   0.43 
Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z36282-4|CAI06055.2|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 591 RDQTLPQQTRSACRSLSPSARAWQNTYSR*QCAQLGQTSPYKLFVANNCANCVVTSDHSK 412
           R+  LP+Q++ A R+L+PS++    TYS       GQ+ P K   + +  + ++  +  K
Sbjct: 346 REPQLPKQSKLAARALAPSSQT-AKTYSTDDYDPFGQSEPLKRHRSCHVISEIIKENERK 404

Query: 411 V 409
           +
Sbjct: 405 I 405


>Z31590-10|CAA83466.3|  801|Caenorhabditis elegans Hypothetical
           protein R01H10.8 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 591 RDQTLPQQTRSACRSLSPSARAWQNTYSR*QCAQLGQTSPYKLFVANNCANCVVTSDHSK 412
           R+  LP+Q++ A R+L+PS++    TYS       GQ+ P K   + +  + ++  +  K
Sbjct: 346 REPQLPKQSKLAARALAPSSQT-AKTYSTDDYDPFGQSEPLKRHRSCHVISEIIKENERK 404

Query: 411 V 409
           +
Sbjct: 405 I 405


>DQ104391-1|AAZ08414.1|  801|Caenorhabditis elegans CNK-1 protein.
          Length = 801

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 591 RDQTLPQQTRSACRSLSPSARAWQNTYSR*QCAQLGQTSPYKLFVANNCANCVVTSDHSK 412
           R+  LP+Q++ A R+L+PS++    TYS       GQ+ P K   + +  + ++  +  K
Sbjct: 346 REPQLPKQSKLAARALAPSSQT-AKTYSTDDYDPFGQSEPLKRHRSCHVISEIIKENERK 404

Query: 411 V 409
           +
Sbjct: 405 I 405


>Z48809-5|CAE17927.1|  205|Caenorhabditis elegans Hypothetical
           protein T01E8.8 protein.
          Length = 205

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 349 QKKTTTTHRNISSKPAAHWKYFGVVRCD 432
           +++ +T  R +S+KP  H   +GVV CD
Sbjct: 150 KRQASTPKREMSTKPIGHLTLYGVVDCD 177


>U56961-3|AAK39294.1|  634|Caenorhabditis elegans Hypothetical
           protein T19D7.4 protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 409 YFGVVR--CDNTIRTIIGNEKFVRRRLAELCTLSTRVRVLPGTRRWRQRSTGTTSLLRQR 582
           ++G+V   CD  I T+  + K   + L + C   T + V   T R+R R    T LL Q 
Sbjct: 303 HYGLVSQVCDRKIFTLFKSIKIFIKSLIQTCEQKTPLYVFAQTTRYRSRI--CTHLLSQT 360

Query: 583 LVPRVIXYENS 615
           L+  +  YE +
Sbjct: 361 LM--IFDYETN 369


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 479 VWPSCAHCQREYVFCQARADGDKDRQALRVCCGSVW 586
           +W     C+  +V C   +  DK      VCC S W
Sbjct: 139 LWTRAQFCEAGHVVCGIESQSDKPNNVNMVCC-SPW 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,359
Number of Sequences: 27780
Number of extensions: 312512
Number of successful extensions: 1037
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)