Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060268.seq
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.55 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   1.7  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   3.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 155 SSNAFRLEGWGNRCNYTEPLELISQGGWRI 244
           + N+ +  G      Y E +EL  +GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 570 TILTYSQFDYRL*SNNQSLTNKEYMC-VFL 656
           T L +  F Y++  NNQS  N++  C +FL
Sbjct: 475 THLQHQPFTYKITVNNQSNGNRKGTCRIFL 504


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = -3

Query: 645 TYTLCLSNFGYCF 607
           T+++C++ F YC+
Sbjct: 243 TFSICITQFYYCY 255


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 650 HTHILFVCQTLVIALKSVVKLRI-G*YCLYLILRVFVY 540
           + H+LF C  ++  +  +  L I   YC  +IL    Y
Sbjct: 263 YMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYY 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,258
Number of Sequences: 336
Number of extensions: 3561
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)