Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060268.seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    29   0.59 
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   2.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    27   2.4  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   7.3  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   9.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   9.6  

>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 654 ETHTYTLCLSNFGYCFKVCSQIENRLILFIFNITS 550
           + H   L L     CFK+C ++ NR+ + +F  +S
Sbjct: 98  QAHMVDLGLQPHSSCFKICKRLYNRIQILVFMSSS 132


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  YMTHLNFTGYWYFTGGSRT-SCTYARVGTTALPIFAVK 156
           Y+T + ++G  YFTG   T   T     T + PI+ ++
Sbjct: 226 YLTTIEYSGKGYFTGKKNTFKATIVNAKTKSEPIYRIE 263


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +1

Query: 52  THLNFTGYWYFTGGSRTSC--TYARVGTT 132
           T   FT YW+ TG    S   TYA  G T
Sbjct: 113 TSHTFTAYWWMTGAGLNSMTDTYAATGNT 141


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 207 SP*NLYLKVGGAFAL*CLWAP 269
           SP N +L +GGA A+  LW P
Sbjct: 203 SPDNRHLAIGGADAITSLWDP 223


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 301 SSQPTGC*VMAGAHRHYNANAPPTLRYKF*GLSIVTTVAPPF 176
           +SQP  C ++ G+H H +A      R    G+ +V  +  PF
Sbjct: 266 NSQPLVC-ILVGSHDHASAAVAAGRRLCAIGIKVVLRLLTPF 306


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = -3

Query: 66  KIQMCHIRTLYDTF---EYNLKTL 4
           +I+ CH+R LY+ F   +Y+L++L
Sbjct: 288 RIEDCHLRCLYEAFSGIDYDLESL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,488
Number of Sequences: 5004
Number of extensions: 51936
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)