Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060268.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0749 - 6305087-6307522                                           30   1.4  
10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359     30   1.9  

>11_01_0749 - 6305087-6307522
          Length = 811

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 179 GWGNRCNYTEPLELISQGGWRICVVVSMGSSH 274
           G   R     P++ +S GG+R+C V+S G  H
Sbjct: 131 GRSKRVYLGPPIQALSSGGYRVCGVLSSGELH 162


>10_08_0209 + 15869966-15870024,15870050-15870138,15870963-15872359
          Length = 514

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 120 PCVRTRGPATTSKIPVTSKIQMCHI 46
           PC   RGPA    + +TS  Q CHI
Sbjct: 38  PCTLPRGPANLGMLRMTSDQQRCHI 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,946,185
Number of Sequences: 37544
Number of extensions: 349874
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)