Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060268.seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.090
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.090
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 195 QRLPHPSSRNALL-LHGKNRQGGGTYPCVRTRGPATTSKIPVTSKIQMCHIRTLYDTFEY 19
           ++LP    ++ LL L+G NR+  G Y C+  R    T++     ++       LY   E 
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQ 431

Query: 18  NLK 10
            L+
Sbjct: 432 TLQ 434


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 195 QRLPHPSSRNALL-LHGKNRQGGGTYPCVRTRGPATTSKIPVTSKIQMCHIRTLYDTFEY 19
           ++LP    ++ LL L+G NR+  G Y C+  R    T++     ++       LY   E 
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLGNAPPMLLYSFIEQ 431

Query: 18  NLK 10
            L+
Sbjct: 432 TLQ 434


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 117 TGRYHRPAYFCREAVMRFGLKGGATVVTILSP 212
           +G Y  PA+    +  R+ L   ATV T ++P
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAP 469


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 206 EPLELISQGG-WRICVVVS 259
           EP   ++  G WR+CV +S
Sbjct: 93  EPDSKVTYSGLWRVCVAIS 111


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 191 RCNYTEPLELISQGGWRICVVVSMGS 268
           RCN T     I   GW    +VS G+
Sbjct: 363 RCNATGAFSWIGSDGWSARGLVSDGN 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,696
Number of Sequences: 438
Number of extensions: 3972
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)