Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060268.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    28   6.3  
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot...    27   8.3  

>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
            catalytic subunit, putative similar to SP|Q07864 DNA
            polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
            polymerase II subunit A) {Homo sapiens}; contains Pfam
            profiles: PF03175 DNA polymerase type B, organellar and
            viral, PF00136 DNA polymerase family B, PF03104 DNA
            polymerase family B, exonuclease domain
          Length = 2271

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -1

Query: 308  VDELTAHRVLSDGWSP*TLQRKCAT--HLEI*VLRAQYSYNGCPTLQA-ETHYCFTAKIG 138
            +D    HR   DGW    L  K  T  H     +   Y YN   T +A    YC  +K+ 
Sbjct: 1438 IDNKAKHRNTQDGWEVGELHMKTTTECHYLKRSIPLVYLYNSTSTGRAIYVLYCHVSKLM 1497

Query: 137  RAVV 126
             AVV
Sbjct: 1498 SAVV 1501


>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
           contains Pfam profiles PF04937: Protein of unknown
           function (DUF 659), PF05699 hAT family dimerisation
           domain
          Length = 761

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  YWLLVFYWW*QDLLYVRTGRYHRPAYF 146
           YW ++  WW Q  LY   G Y  P +F
Sbjct: 517 YWKIIDRWWLQQPLYA-AGFYLNPKFF 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,896
Number of Sequences: 28952
Number of extensions: 276058
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)