Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060267.seq
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    42   8e-05
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    40   3e-04
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    28   1.1  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 41.5 bits (93), Expect = 8e-05
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
 Frame = +3

Query: 243 GILRRVKGVEMFIHQFLERCDTKCQ-IINLGCGFDTLYWRLKDTTQAVGN---FIELDFP 410
           G   R   +   ++QFL+    K + I+NLG G+D L ++L  + +   +   F ++D+P
Sbjct: 62  GYWTRCMAIRFAVYQFLKNKTGKRKAIVNLGAGYDPLAFQLLSSHEYNTDDVVFYDVDYP 121

Query: 411 AVTAKKAHIIKRNXALLEKICNEDG*VVIREXRLHSDRXHLVGCRPALL 557
                +  +I R+ + L  I  ED    +    +H+   H  GC   LL
Sbjct: 122 ETIENRVQMI-RSDSFLSSIVLEDKEFDLDGTEIHTKNYHSFGCNLNLL 169


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 243 GILRRVKGVEMFIHQFLERCDTKCQIINLGCGFDTLYWR-LKDTTQAVGNFIELDFPAVT 419
           G   R   ++  + +F+E  D K QII+LG G DT  +R + +       FIE DF    
Sbjct: 46  GTYVRTWSIDHILQKFIESFDGKKQIISLGAGTDTRVFRYISEYGPENLKFIEFDFYPNC 105

Query: 420 AKKAHIIKRNXALLEKI 470
            +K   I+++ AL + I
Sbjct: 106 IRKIRTIEKHEALKQNI 122


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 341 ESTAKIYNLAFSITSLQELMYEHLDPLDP 255
           E    +Y+  FS+  L  L + +++P+DP
Sbjct: 269 EDATDVYHTCFSLAGLSLLQFPNIEPVDP 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,359
Number of Sequences: 5004
Number of extensions: 41851
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)