Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060267.seq
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0287 - 2099008-2099023,2099441-2099472,2099776-2099814,209...    51   6e-07
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287           28   4.5  
06_03_1219 - 28491185-28494415                                         28   4.5  
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611...    28   5.9  
01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375...    28   5.9  
09_02_0472 + 9657354-9658346                                           27   7.8  

>06_01_0287 -
           2099008-2099023,2099441-2099472,2099776-2099814,
           2099916-2099967,2100100-2100164,2100238-2100321,
           2101144-2101191,2101272-2101392,2101809-2101911,
           2102456-2102537,2102670-2102717,2102993-2103129,
           2103225-2103313,2104206-2104327
          Length = 345

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = +3

Query: 243 GILRRVKGVEMFIHQFL-----ERCDTKCQIINLGCGFDTLYWRLKDTTQAVGNFIELDF 407
           G   R   +   +HQFL          + QI++LG GFDT +++L+D   A   ++ELDF
Sbjct: 71  GYYARWSVLRKLLHQFLGAGNGSNDQNRKQILSLGAGFDTTFFQLQDEGIAPYLYVELDF 130

Query: 408 PAVTAKKAHIIKRNXALLEKI 470
             VT+KKA II     + EK+
Sbjct: 131 KEVTSKKAAIINHYSQMKEKL 151



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +1

Query: 151 KRCAVELGYWKDDYIGYFAKHVDRKAPEINRGYYA 255
           K   V  GY KDDY+ +F +   ++AP INRGYYA
Sbjct: 40  KLSCVNKGYMKDDYVHFFVRRTTKRAPIINRGYYA 74


>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
          Length = 540

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 234 DQSGILRRVKGVEMFIHQFLER 299
           D  G +RR+K V   IH+FL+R
Sbjct: 240 DLQGYIRRMKNVNRLIHRFLDR 261


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +2

Query: 185 MITLDTSLNMLTEKHQRSIGDTTQGQGGRDVHTSILGEM*Y*MPDYKSWLWIR 343
           ++TLD S N+L  +   SI   T+ +  R +H ++ G++    P   +W  +R
Sbjct: 277 LVTLDLSYNLLAGELPESISQITKLEEVRLIHNNLTGKL---PPALSNWTSLR 326


>09_02_0234 -
           6116931-6117052,6117549-6118369,6118573-6118601,
           6118711-6119020,6119469-6119476,6120104-6120232,
           6120341-6120445
          Length = 507

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +2

Query: 344 HSLLETEGHDPSSWQFYRVGFSSCYCKEGSYHQAQXSTTGKDL 472
           H LLETEG++ S   F+    S  YC+ G+  + +  T  KD+
Sbjct: 193 HGLLETEGYEASDDLFFT--SSDTYCR-GTLTKIEGETHVKDM 232


>01_05_0153 +
           18635495-18636952,18637262-18637333,18637448-18637595,
           18637690-18637871
          Length = 619

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 419 SNSWKIQLYKIANCLGRVLQSPVKSVESTAKIYN-LAFSITSLQE 288
           S +  + +YKI    GRVL S   S E+  ++ N L  ++ SL+E
Sbjct: 155 SRAGVLDIYKIEKYKGRVLTSIRASTETLERVVNMLGLNLKSLEE 199


>09_02_0472 + 9657354-9658346
          Length = 330

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 282 HQFLERCDTKCQIINLGCGFDTLYWRLKDTTQAVGNFIE 398
           H F E  ++ C + +  C ++ +  RL    +AVG++ E
Sbjct: 28  HPFREESNSVCTVQDTPCCYNPMVTRLSRWAEAVGDYYE 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,509,891
Number of Sequences: 37544
Number of extensions: 280961
Number of successful extensions: 567
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)