Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060267.seq
         (565 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18184| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   36   0.023

>SB_18184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 24/40 (60%), Positives = 31/40 (77%)
 Frame = +1

Query: 148 CKRCAVELGYWKDDYIGYFAKHVDRKAPEINRGYYAGSRG 267
           CKR AV+ GYW+D++I YF K  +R+ PEINRGYYA  +G
Sbjct: 19  CKRSAVQKGYWEDNFIQYFVKQAERRTPEINRGYYARVKG 58



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +3

Query: 243 GILRRVKGVEMFIHQFLERCDTKCQIINLGCGFDTLYWRLK 365
           G   RVKG+   + QF+E  D  CQII+LG GFDTL+W+LK
Sbjct: 51  GYYARVKGMHTLVEQFVELTDRSCQIISLGAGFDTLFWQLK 91


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 163 VELGYWKDDYIGYFAKHVDRKAPEINRGYY 252
           V  GY+KD+++ +F     +++P INRGYY
Sbjct: 64  VRAGYFKDEFLKFFVTKDAKRSPLINRGYY 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,996
Number of Sequences: 59808
Number of extensions: 311899
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)