Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060267.seq
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-3|CAA84295.1|  333|Caenorhabditis elegans Hypothetical pr...    75   4e-14
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>Z34533-3|CAA84295.1|  333|Caenorhabditis elegans Hypothetical
           protein B0285.4 protein.
          Length = 333

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
 Frame = +3

Query: 243 GILRRVKGVEMFIHQFLERCDTKCQIINLGCGFDTLYWRLKDTTQAVGNFIELDFPAVTA 422
           G   R   +E ++  FL   D   Q+++LGCGFDTL+WRL  +   +  ++E+DF +VT+
Sbjct: 78  GYWARTAAIEKYVRDFLNEFDGNAQVVSLGCGFDTLFWRLVSSGAKLVKYVEVDFSSVTS 137

Query: 423 KK-AHIIK---RNXALLEKICNEDG*VVIREXRLHSDRXHLVG 539
           KK  HI+K    N   L+K    D  VV     LH+   HL+G
Sbjct: 138 KKIRHILKPIGPNSVDLKKSFESDA-VVSHHADLHAGNYHLIG 179



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = +1

Query: 148 CKRCAVELGYWKDDYIGYFAKHVD-----RKAPEINRGYYA 255
           CK  A + GYWKD++I  FA         R+ PEI+ GY+A
Sbjct: 41  CKYFATQKGYWKDEFISRFANSSSNVSEARRFPEISMGYWA 81


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 423 KKAHIIKRNXALLEKICNEDG*VVIREXRLHSDRXHL 533
           K A  IK++  +LEK+C EDG  V     L S +  L
Sbjct: 337 KVAEFIKKSDLMLEKVCAEDGASVKTVEELTSTKKEL 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,193
Number of Sequences: 27780
Number of extensions: 234385
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)