Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060266.seq
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 33 0.048
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 1.0
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 28 1.0
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.4
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 3.1
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.1
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 5.5
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 26 5.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 25 7.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 9.5
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 25 9.5
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 32.7 bits (71), Expect = 0.048
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQE 340
+Q S IE A+ + EYK + SAEE+ ++ EL ++ E
Sbjct: 278 LQDFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENE 319
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 308 DELDELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSSS 430
D + +LNT ++N ++ + PI+Q S T TLVK S+S
Sbjct: 523 DTISKLNTDKDNYLIKSKKEPIQQKSVSSET-TLVKPSSTS 562
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 245 NASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIE 376
N +K VE D + N++DE +EL ++ G+L + + +E
Sbjct: 7 NETKLVENENLQEDLSRLNLEDEKNELKLNEKGGVLKENDEHLE 50
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 87 NQIEKRLLHFLDIHDTLIANPFLFIE 10
NQI K L+ F DIH+T + PFL ++
Sbjct: 116 NQISKPLITFSDIHET-VNVPFLCLD 140
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 203 KCI*IQ--ATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGIL 352
KC+ +Q A Y+ P K KK S +NM+DEL EN +L
Sbjct: 111 KCLRMQIVAQEEYVAPLIQKLEIIEKKLDKSFRKNMEDELRITRLASENNVL 162
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +2
Query: 230 SYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILY 355
+YI+ ASK V + + A++ +KD + +L+ ++E +L+
Sbjct: 356 NYIDVPASKKVATSLQRWNDAQKELKDNIPDLSEEEEKLLLH 397
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 293 EENMKDELDELNTKQENGILYQ 358
+ENM+D DE N Q + I+Y+
Sbjct: 201 DENMEDSEDESNGPQADSIMYE 222
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 171 LICLNCVDKLINAYEFK-QQCLTSNQMLQSA 260
LI L C++ LI+AY F+ + +N +++SA
Sbjct: 491 LIFLQCINYLIDAYLFRAASAIAANTIMRSA 521
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 254 KCVEEYKKSVDSAEENMKDELDELNTKQEN 343
+ E YK+ V ++N+ E+D +NT+ N
Sbjct: 101 EAAEAYKEIVYDLQKNLASEMDVINTRIVN 130
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 236 IEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQ 358
++P+ SKCV YKK +AE ++ + + + NG+L Q
Sbjct: 691 VKPDTSKCVAIYKK---AAEMDVVEAMFRIALIYLNGLLGQ 728
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 528 KPKPHNPDLRQYNYD 572
+P+P+ D QYNYD
Sbjct: 447 EPQPYGTDFYQYNYD 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,576
Number of Sequences: 5004
Number of extensions: 47235
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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