Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060266.seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    32   0.35 
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    29   2.4  
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    29   2.4  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    28   7.5  
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682...    28   7.5  
11_03_0068 + 9564354-9565180,9566658-9568704                           27   9.9  
07_01_0368 + 2739908-2740320,2740437-2740816,2740893-2740977,274...    27   9.9  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    27   9.9  

>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +2

Query: 272 KKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSSSVVTKAL 448
           K   DS  +    E+D +  ++++G+ +  EL  E D DG +  T V+     VV KAL
Sbjct: 200 KDDDDSDGDVGASEVDGVEAEEDDGVNWS-ELENEDDEDGDYGETKVEVEEGDVVGKAL 257


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 230  SYIEP---NASKCVEEYKKSVDSAEENMKDELDELNTKQEN 343
            SY+E    +A   VEE KK     EEN+  + DELN  Q N
Sbjct: 999  SYLEAQLLDALSEVEENKKEAQLLEENLAHKNDELNDLQNN 1039


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
 Frame = +3

Query: 438 PKPWVQEREGD------QGNIL--MNKDKLMFTRISGKKPKPHNPDLRQYNYDSKRLFEH 593
           P+P  +EREG       +G+ L    KD       + K  K H+P+  + NYDS+  ++H
Sbjct: 679 PQPSAKEREGSSVPFEREGSNLAKQEKDSDDERNRARKYRKKHHPESDEENYDSEESYKH 738

Query: 594 *RRTLR 611
            R+  R
Sbjct: 739 SRKKHR 744


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +2

Query: 200 NKCI*IQATMSYIE---PNASKCVEEYKKSVDSAE---ENMKDELDELNT 331
           N C+ +     YI       SK +EE +KS+D  +   E MK E+++L T
Sbjct: 795 NPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIEDLKT 844


>02_05_0880 +
           32466538-32467083,32467333-32467644,32467731-32468201,
           32468481-32469246,32469332-32469774
          Length = 845

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +2

Query: 272 KKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSSSVVTK 442
           ++++DSA   MK+ELD+ +    +  ++  EL ++Q  DG     ++ T    ++ K
Sbjct: 172 EETMDSAPHGMKEELDKADWSSTHNRIF-CELCVQQIEDGNRPIGIMTTRWYQIIAK 227


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 167 YVNMLKLCGQVNKCI*IQATMSYIEPNASKCVEEYKKSVDSAEENM 304
           Y+++L+ CG +   I   A++   +P   +    Y+ SV SA EN+
Sbjct: 361 YIDILRRCGGLPLAIISLASLLATKPRTKEQWGRYRNSVCSATENV 406


>07_01_0368 +
           2739908-2740320,2740437-2740816,2740893-2740977,
           2741053-2741167,2741493-2741615
          Length = 371

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 260 VEEYKKSVDSAEENMKDELDELNTKQENGI 349
           +EE+ +SVDS  E +  EL +L+  Q N +
Sbjct: 97  LEEWTRSVDSQLEEILTELQQLSAAQMNAV 126


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 329 TKQENGILYQYEL--PIEQDSDGQWTRTLVKTPSSSV 433
           T + +G++Y+  L       +D QWTRT   T SSS+
Sbjct: 189 TPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSI 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,414
Number of Sequences: 37544
Number of extensions: 271934
Number of successful extensions: 730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)