Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060266.seq
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33143| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 3.3
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77) 29 4.4
SB_28201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83) 29 4.4
SB_57092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3) 28 5.8
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06) 28 5.8
SB_50544| Best HMM Match : HALZ (HMM E-Value=1) 28 7.6
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42) 28 7.6
>SB_33143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 284 DSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSS 427
+ EE+ K D++N E I E PIE DG + T TP+S
Sbjct: 92 EKVEESEKQNSDKINNNDETQIESNAEAPIEAKLDGPTSPTSPTTPTS 139
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +2
Query: 239 EPNASKCVEEYKKSVDSAEENMKDELDELNTKQENG----ILYQYELPIEQDSDGQWTRT 406
EP K V + +VD +++ D NT NG +L Q P E SD R
Sbjct: 755 EPKKEKNVSQAASNVDKEQKSSGSTSDSKNTNSSNGNKEKLLSQISTPKETLSDSTDKRP 814
Query: 407 LVKTP 421
+++ P
Sbjct: 815 VLELP 819
>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
Length = 549
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -1
Query: 157 SSSLISMLQQNLYF----SLNCWSFSSKSNRETASPLSRHTRHVDCQSIFIY*SS 5
SS+LI Q +L+ +LN W FS +S TASP +H C + Y +S
Sbjct: 2 SSTLIVFYQASLWLQLISTLNFWRFSDRSPLHTASP--QHQMASSCTTRISYSAS 54
>SB_28201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 272 KKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSS 427
KK A N LD+ T QE+G L LP D +T+ L PS+
Sbjct: 40 KKDAQQANSNPVKNLDD--TVQESGYLVPMALPQNAIEDESYTKDLPPPPST 89
>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
Length = 333
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 242 PNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTR 403
PN + +E+ K SV + D + NT+ G E+P +D D W +
Sbjct: 16 PNKGEDIEQVKASVVEDSGDFLDGITTNNTQHNEGDFVDNEIPCPEDLD-MWRK 68
>SB_57092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 175 INVGNRSSSLISMLQQNLYFSLNCWSFSSKSNRETASPLSRHTRHVDCQSIFI 17
++VGN + ++ + + W+ +++ RE +P+S+H DC S+ I
Sbjct: 126 LSVGNSQTVIMELFPAARRLLADLWT--TRTVREITNPMSKHGTVFDCSSVKI 176
>SB_52452| Best HMM Match : Borrelia_orfA (HMM E-Value=1.3)
Length = 471
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 263 EEYKKSVDSAEENMKDELDELNTKQENG 346
EE K+S E ++K DE TKQE+G
Sbjct: 230 EEPKRSSSEQEVDIKQNFDENTTKQESG 257
>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
Length = 553
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 197 VNKCI*IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQ 358
VN C T S +EP S + S ++MK+E+DE N + N I Q
Sbjct: 414 VNTCRQGWKTTSSLEPTTSATTSTVQVDAISIGDDMKEEVDE-NVRSVNNITCQ 466
>SB_50544| Best HMM Match : HALZ (HMM E-Value=1)
Length = 123
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDS 385
IQA +S ++ + KK D EN+ ++L T + I Y+L ++Q+S
Sbjct: 23 IQAQLSSVKSKGKELEANLKKK-DQLVENLNNKLKRSETDVKTNITQIYDLLVKQNS 78
>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
Length = 870
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDS 385
IQA +S ++ + KK D EN+ ++L T + I Y+L ++Q+S
Sbjct: 770 IQAQLSSVKSKGKELEANLKKK-DQLVENLNNKLKRSETDVKTNITQIYDLLVKQNS 825
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,865,274
Number of Sequences: 59808
Number of extensions: 332589
Number of successful extensions: 1035
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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