Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060266.seq
         (655 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   6.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   8.4  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 263 EEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQW 397
           EE +   D  EE+ +DE DEL      G L   ++   +D DGQ+
Sbjct: 487 EEDEYEGDDTEEDEEDEDDELAA----GPLGTSDVVTVEDGDGQY 527


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 57  ESGEAVSLFDLDENDQQFSEKYKFCCSIEINED 155
           ++GE V++    E    F+E  KF  S EIN +
Sbjct: 867 QNGEWVTVKAAPEKVNYFNEIDKFISSFEINSE 899


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,868
Number of Sequences: 2352
Number of extensions: 10648
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)