Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060266.seq
(655 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 33 1.2
L41939-1|AAA99310.1| 987|Homo sapiens protein-tyrosine kinase p... 32 1.6
AL512444-4|CAI16429.1| 1055|Homo sapiens EPH receptor B2 protein. 32 1.6
AL512444-3|CAI16430.2| 986|Homo sapiens EPH receptor B2 protein. 32 1.6
AL512444-2|CAI16428.1| 987|Homo sapiens EPH receptor B2 protein. 32 1.6
AL158086-8|CAI22898.1| 1055|Homo sapiens EPH receptor B2 protein. 32 1.6
AL158086-7|CAI22899.2| 986|Homo sapiens EPH receptor B2 protein. 32 1.6
AL158086-6|CAI22897.1| 987|Homo sapiens EPH receptor B2 protein. 32 1.6
AL035704-4|CAI22646.1| 1055|Homo sapiens EPH receptor B2 protein. 32 1.6
AL035704-3|CAI22647.2| 986|Homo sapiens EPH receptor B2 protein. 32 1.6
AL035704-2|CAI22645.1| 987|Homo sapiens EPH receptor B2 protein. 32 1.6
AF025304-1|AAB94602.1| 1055|Homo sapiens protein-tyrosine kinase... 32 1.6
AB210018-1|BAE06100.1| 1004|Homo sapiens EPHB2 variant protein p... 32 1.6
U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine... 31 3.6
J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein. 31 3.6
AC005933-1|AAC71651.1| 944|Homo sapiens RYNR_HUMAN [AA 4362- 50... 31 3.6
L36643-1|AAA74244.1| 970|Homo sapiens receptor protein-tyrosine... 30 6.3
BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein. 30 6.3
BC029839-1|AAH29839.1| 313|Homo sapiens C10orf73 protein protein. 30 6.3
AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific ribonu... 30 6.3
X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein. 30 8.3
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto... 30 8.3
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 32.7 bits (71), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 320 ELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPS 424
E+ K E LY E P E D GQW R ++ TPS
Sbjct: 4510 EIARKLEFDGLYITEQPSEDDIKGQWDRLVINTPS 4544
>L41939-1|AAA99310.1| 987|Homo sapiens protein-tyrosine kinase
protein.
Length = 987
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL512444-4|CAI16429.1| 1055|Homo sapiens EPH receptor B2 protein.
Length = 1055
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL512444-3|CAI16430.2| 986|Homo sapiens EPH receptor B2 protein.
Length = 986
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL512444-2|CAI16428.1| 987|Homo sapiens EPH receptor B2 protein.
Length = 987
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL158086-8|CAI22898.1| 1055|Homo sapiens EPH receptor B2 protein.
Length = 1055
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL158086-7|CAI22899.2| 986|Homo sapiens EPH receptor B2 protein.
Length = 986
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL158086-6|CAI22897.1| 987|Homo sapiens EPH receptor B2 protein.
Length = 987
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL035704-4|CAI22646.1| 1055|Homo sapiens EPH receptor B2 protein.
Length = 1055
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL035704-3|CAI22647.2| 986|Homo sapiens EPH receptor B2 protein.
Length = 986
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AL035704-2|CAI22645.1| 987|Homo sapiens EPH receptor B2 protein.
Length = 987
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AF025304-1|AAB94602.1| 1055|Homo sapiens protein-tyrosine kinase
EPHB2v protein.
Length = 1055
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 427 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 480
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 481 YNATAIKSPTNTVTVQGL 498
>AB210018-1|BAE06100.1| 1004|Homo sapiens EPHB2 variant protein
protein.
Length = 1004
Score = 32.3 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 445 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 498
Query: 395 WTRTLVKTPSSSVVTKAL 448
+ T +K+P+++V + L
Sbjct: 499 YNATAIKSPTNTVTVQGL 516
>U48508-1|AAC51191.1| 5038|Homo sapiens skeletal muscle ryanodine
receptor protein.
Length = 5038
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 320 ELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPS 424
EL K E LY E P + D GQW R ++ TPS
Sbjct: 4677 ELARKLEFDGLYITEQPEDDDVKGQWDRLVLNTPS 4711
>J05200-1|AAA60294.1| 5032|Homo sapiens RYR1 protein.
Length = 5032
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 320 ELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPS 424
EL K E LY E P + D GQW R ++ TPS
Sbjct: 4671 ELARKLEFDGLYITEQPEDDDVKGQWDRLVLNTPS 4705
>AC005933-1|AAC71651.1| 944|Homo sapiens RYNR_HUMAN [AA 4362- 5032]
protein.
Length = 944
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 320 ELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPS 424
EL K E LY E P + D GQW R ++ TPS
Sbjct: 583 ELARKLEFDGLYITEQPEDDDVKGQWDRLVLNTPS 617
>L36643-1|AAA74244.1| 970|Homo sapiens receptor protein-tyrosine
kinase protein.
Length = 970
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 215 IQATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQ 394
+ T + P+A + + ++VDS L Q NG++ YEL + +
Sbjct: 413 VNITTNQAAPSAVSIMHQVSRTVDSIT------LSWSQPDQPNGVILDYELQYYEKELSE 466
Query: 395 WTRTLVKTPSSSV 433
+ T +K+P+++V
Sbjct: 467 YNATXIKSPTNTV 479
>BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein.
Length = 639
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 227 MSYIEPNASKC----VEEYKKSVDSAEENMKDELDELNTK 334
+SY+ PN SKC E+ KK +D E ++D L K
Sbjct: 159 LSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENK 198
>BC029839-1|AAH29839.1| 313|Homo sapiens C10orf73 protein protein.
Length = 313
Score = 30.3 bits (65), Expect = 6.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 90 DENDQQFSEKYKFCCSIEINEDDLLPTLIC 179
+ ++ QF +Y+ CCS +ED+ P +C
Sbjct: 108 ESSEYQFYSQYQSCCSCMCDEDNAAPQSVC 137
>AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific
ribonuclease protein.
Length = 639
Score = 30.3 bits (65), Expect = 6.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 227 MSYIEPNASKC----VEEYKKSVDSAEENMKDELDELNTK 334
+SY+ PN SKC E+ KK +D E ++D L K
Sbjct: 159 LSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENK 198
>X65964-1|CAA46780.1| 1618|Homo sapiens nestin protein.
Length = 1618
Score = 29.9 bits (64), Expect = 8.3
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 218 QATMSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQW 397
Q ++++E + + E ++V A E ++ EL +L E G L + +EQ +G+W
Sbjct: 193 QERVAHMETSLDQTRERLARAVQGARE-VRLELQQLQA--ERGGLLERRAALEQRLEGRW 249
Query: 398 TRTLVKTPSSSVVTKAL 448
L T + +AL
Sbjct: 250 QERLRATEKFQLAVEAL 266
>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
protein.
Length = 4866
Score = 29.9 bits (64), Expect = 8.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 320 ELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPS 424
E+ K E LY E P E D GQW ++ TPS
Sbjct: 4506 EIARKLEFDGLYITEQPSEDDIKGQWDPLVINTPS 4540
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,449,281
Number of Sequences: 237096
Number of extensions: 1551827
Number of successful extensions: 4026
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4026
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -