Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060266.seq
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    28   6.7  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    28   6.7  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    28   6.7  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    28   6.7  
AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical...    28   6.7  
AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical ...    28   6.7  
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    27   8.8  

>Z66516-2|CAA91360.1|  418|Caenorhabditis elegans Hypothetical
           protein W03C9.2 protein.
          Length = 418

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 217 NSYAFINLSTQFKHINVGNRSSSLISMLQQNLYF--SLNCWSFSSKSNRE 74
           N Y + N+S  F+HI    + SSL  M  +NL    +L   S SSK + E
Sbjct: 279 NFYEYSNISKSFRHIKPLEQESSLWPMAMRNLLIPGALGANSSSSKGSSE 328


>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
           protein C56E6.6 protein.
          Length = 1102

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 509 EHQFVLVH*DISLVSLSFLDPRLWSQLNYWESSLVSESTGHHCPVL 372
           EH  +L + D+S   + F+ PR++ +L   ES  +  +   H P L
Sbjct: 341 EHMPLLTYVDVSFNRIRFISPRVFEKLKNLESLFLQNNQLAHFPSL 386


>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 317 DELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSSS 430
           DEL+ + EN I Y+    I Q+ D    RT  K  SSS
Sbjct: 488 DELSDESENEIEYEEPAEIVQEPDNGRQRTWTKLSSSS 525


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 317 DELNTKQENGILYQYELPIEQDSDGQWTRTLVKTPSSS 430
           DEL+ + EN I Y+    I Q+ D    RT  K  SSS
Sbjct: 488 DELSDESENEIEYEEPAEIVQEPDNGRQRTWTKLSSSS 525


>Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.9 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/96 (26%), Positives = 41/96 (42%)
 Frame = -1

Query: 301 VLFCRIYRLFVLLYAL*SIWFDVRHCCLNSYAFINLSTQFKHINVGNRSSSLISMLQQNL 122
           ++FC  +    +L+       DV   C N    +N   Q   +N       LI      L
Sbjct: 131 IVFCSAFFDQYILFGYCKNVIDVPLECDNFQCSVNQCYQDYWVNHEQVLYYLIGSSSVIL 190

Query: 121 YFSLNCWSFSSKSNRETASPLSRHTRHVDCQSIFIY 14
           +F L  WS+ +K+  +T+  +SR T+     SI I+
Sbjct: 191 FFRLFVWSYFAKT--QTSQLISRATQIALLDSIIIF 224


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 48  VCLESGEAVSLFDLDENDQQFSEKYKFCCSIEINEDDL 161
           VCL  GE  S  D    D QFS+     C IE N+ +L
Sbjct: 235 VCLNDGECYSSNDGPHCDCQFSDHDGRNCEIEKNDGEL 272


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 245 NASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPI 373
           N +   EE K++++   E ++ E    N  QENG+L  YE  I
Sbjct: 283 NRNNSKEELKQTLEMLREKVQ-EAKRQNEMQENGLLAAYETNI 324


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 245 NASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPI 373
           N +   EE K++++   E ++ E    N  QENG+L  YE  I
Sbjct: 300 NRNNSKEELKQTLEMLREKVQ-EAKRQNEMQENGLLAAYETNI 341


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 245 NASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPI 373
           N +   EE K++++   E ++ E    N  QENG+L  YE  I
Sbjct: 300 NRNNSKEELKQTLEMLREKVQ-EAKRQNEMQENGLLAAYETNI 341


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 245 NASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPI 373
           N +   EE K++++   E ++ E    N  QENG+L  YE  I
Sbjct: 283 NRNNSKEELKQTLEMLREKVQ-EAKRQNEMQENGLLAAYETNI 324


>AF039047-10|AAB94229.2|  400|Caenorhabditis elegans Hypothetical
           protein K11D12.9 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +2

Query: 227 MSYIEPNASKC---VEEYKKSVDSAEENMKDELDELNTKQENGI 349
           ++++E    +C   V+E K+ ++ +E+++KD  DE+N   E  +
Sbjct: 142 INHLENEKEQCLSEVQELKRLLEDSEQDLKDCKDEMNRLMEERV 185


>AC024804-6|AAF60746.1|  162|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.3 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 87  LDENDQQFSEKYKFCCSIEINEDDLLPTLICLNCVDKLINAYEFKQQCLTSNQMLQS 257
           + EN ++   K+K CC I +    L+   I L  V  L+N ++ K Q   + ++LQS
Sbjct: 1   MPENPEKNFGKFKICCLIFLTLQLLISLFILLGTVPALMN-FDVKFQ-YDATRLLQS 55


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 99  DQQFSEKYKFCCSIEINEDDLLPTLICLNCVDKLINAYE 215
           D  +++  + CC+  I   D+       NC DK+INA +
Sbjct: 223 DDLYNDIARNCCNNNIGTCDIYSKFFDPNCRDKVINALD 261


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 263 EEYKKSVDSAEENMKDELDELNTKQEN 343
           E+  K V+S  EN+K+ L+ELN  + N
Sbjct: 745 EDKVKQVESLLENLKEPLEELNNLRAN 771


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,497,427
Number of Sequences: 27780
Number of extensions: 261333
Number of successful extensions: 911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)