Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060266.seq
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              21   7.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 298 LFCRIYRLFVLLYAL*SIW 242
           LFC+IY +   L+   SIW
Sbjct: 123 LFCQIYAMLGSLFGCGSIW 141


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 298 LFCRIYRLFVLLYAL*SIW 242
           LFC+IY +   L+   SIW
Sbjct: 89  LFCQIYAMLGSLFGCGSIW 107


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 135 SIEINEDDLLPTLICLNCVDK 197
           SIE+ +D  +P ++ +N +DK
Sbjct: 237 SIEMAKDAKVPIIVAINKIDK 257


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 226 CCLNSYAFINLSTQFKHINVGNRSSSLISMLQQNLYFSLNCWSFSSKSNRETASPL 59
           C L    F+N  T F       R++ L S  Q N   + NC   +  ++ + +S L
Sbjct: 65  CMLKKVGFVNADTTFNEEKFRERTTKLDSE-QVNRLVN-NCKDITESNSCKKSSKL 118


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 190 TQFKHINVGNRSSSLISMLQQNLYFSLNCW 101
           T+  H+N G     LI++ ++N     N W
Sbjct: 49  TEKVHVNFGLAFVQLINVNEKNQIMKSNVW 78


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 442 FGHN*TTGSLH*CPSPLAITV 380
           F HN   G L  CP+ L  TV
Sbjct: 258 FSHNDRLGFLTFCPTNLGTTV 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,300
Number of Sequences: 438
Number of extensions: 3428
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)