Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060266.seq
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    32   0.38 
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    32   0.38 
At2g15090.1 68415.m01720 fatty acid elongase, putative similar  ...    29   2.7  
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident...    29   3.6  
At4g02800.1 68417.m00380 expressed protein similar to A. thalian...    29   3.6  
At1g04650.1 68414.m00462 hypothetical protein                          29   3.6  
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof...    28   4.7  
At1g06910.1 68414.m00734 myb family transcription factor contain...    28   4.7  
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER...    28   6.2  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    27   8.2  
At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    27   8.2  

>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 254 KCVEEYKKSVDSAEENMKDELDEL-NTKQE 340
           KC+EEYK   +   EN+K  LD+L  TK E
Sbjct: 377 KCIEEYKLEEEFPPENLKKRLDQLEKTKTE 406


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 254 KCVEEYKKSVDSAEENMKDELDEL-NTKQE 340
           KC+EEYK   +   EN+K  LD+L  TK E
Sbjct: 379 KCIEEYKLEEEFPPENLKKRLDQLEKTKTE 408


>At2g15090.1 68415.m01720 fatty acid elongase, putative similar  to
           fatty acid elongase 1 [GI:881615]
          Length = 481

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 480 ILMNKDKLMFTRISGKKPKPHNPDLRQYNYDSKRLFEH 593
           +L  K+KL F  I+  K K   P+LR Y  D K  FEH
Sbjct: 340 VLPLKEKLAFF-ITFVKKKYFKPELRNYTPDFKLAFEH 376


>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
           identical to F-box protein family, AtFBL4 (GP:21536497)
           [Arabidopsis thaliana]; similar to grr1 GI:2407790 from
           [Glycine max]
          Length = 610

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 416 SSLVSESTGHHCPVLSVVHIDTEY 345
           + L  E+ G HC +L V+++D+EY
Sbjct: 232 TDLSLEAVGSHCKLLEVLYLDSEY 255


>At4g02800.1 68417.m00380 expressed protein similar to A. thaliana
           hypothetical protein T6B20.12 (1946366)
          Length = 333

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 452 DPRLWSQLNYWESSLVSESTGHHCPVLSVVHIDTE 348
           D RLWS +      L+ E++ +H PV + + I++E
Sbjct: 40  DKRLWSNVRNRVDVLLEENSKNHKPVTNTIAIESE 74


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 202 INLSTQFKHINVGNRSSSLISMLQQNLYFSLNCWSFSSKSN 80
           ++  T    ++VG     LIS+++ +L F+   WS S K N
Sbjct: 223 LDKQTLVSKVDVGEIILKLISLIKDSLRFAAEAWSCSVKEN 263


>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 751

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 254 KCVEEYKKSVDSAEENMKDELDEL-NTKQENGILYQYELPIEQ 379
           + + EYK+  + AEE   D L+EL NTK   G++ + +L +E+
Sbjct: 179 EAMPEYKREAELAEEAKYDALEELENTK---GLIEELKLELEK 218


>At1g06910.1 68414.m00734 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 390

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +2

Query: 230 SYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTRTL 409
           S +EP ++    E+  S+D ++  M D+++ +N  +   I+     P++++   +  R  
Sbjct: 278 SLMEPRSTAHTYEWNDSIDDSDGEMGDDIERINKSKRKRIVVS---PLKRNRCSEGARR- 333

Query: 410 VKTPSSSVVTKAL 448
            K P S+  T A+
Sbjct: 334 PKLPWSTAETLAV 346


>At4g03350.1 68417.m00457 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 263

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 227 MSYIEPNASKCVEEYKKSVDSAEENMKDELDELNTKQENGILYQYELPIEQDSDGQWTR 403
           M  +E NA   VEE +K +   +E       ELN   E   L   ELP+ +    +W R
Sbjct: 197 MIQVEVNADDNVEELRKELVKMQER-----GELNLPHEAFHLVSSELPLIETKSFKWNR 250


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 223 CLNSYAFINLSTQFKHINVGNRSSSLISML 134
           C NS   + L  QFK  NV  R S L+  L
Sbjct: 51  CCNSLEDLKLQRQFKAFNVSGRCSPLLKSL 80


>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 461 SFLDPRLWSQLNYWESSLVSESTGHHCP 378
           +FLD +  S +N+W +S  + S+ H+ P
Sbjct: 160 TFLDAKSLSSINFWMNSAEARSSTHYDP 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,604,377
Number of Sequences: 28952
Number of extensions: 240274
Number of successful extensions: 756
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)