Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060264.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    28   1.1  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   5.9  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   5.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   7.8  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/68 (35%), Positives = 34/68 (50%)
 Frame = +2

Query: 473 GYSNTVLFDAGITLAGILHSLKVCLR*SPSYNSLQSSMSCSTYRKVYPIGRRKLSCTGDP 652
           GY + + F A I  AG+L      LR S +  SLQ S+S ST+   YP+ + ++      
Sbjct: 420 GYYHLLTFQALID-AGLLR-----LRQSTNI-SLQKSLSYSTWLNTYPLVKDEVDEQNPE 472

Query: 653 KNNYTYQG 676
              YTY G
Sbjct: 473 DIAYTYSG 480


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 112 NKTPENYINNQNTCFDHSTTNR 47
           N  P+N +NN+   F HS+T++
Sbjct: 44  NFVPQNVLNNEYQSFQHSSTSQ 65


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 506 SQHQIVRCCCTHFFQTNCS 450
           SQ  + +C  TH F+ NCS
Sbjct: 93  SQENLTKCDTTHDFEKNCS 111


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 475 PIFSKRTVQYLDNLYYETYFMRFLT 401
           PIFSKR     +NLY + + + F T
Sbjct: 156 PIFSKRKYNDTENLYEQPFHLEFDT 180


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 55   WLSDRSKCFG-YLYNSRVFYWVPFLVD 132
            W++  + C   +LYN   F W  F VD
Sbjct: 1354 WITLTALCISPFLYNPHQFAWTDFFVD 1380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,542
Number of Sequences: 5004
Number of extensions: 51558
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)