Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060264.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    31   0.77 
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine rec...    30   1.8  
U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine rec...    30   1.8  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   2.4  
CU457740-6|CAM36336.1|  365|Caenorhabditis elegans Hypothetical ...    29   4.1  

>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 590  SSSMTVTSCMMDFIEDKL*GYEVCQLV*SQHQIVRCCCTHFFQTNCSI 447
            ++++TV +C+  ++ + L  Y+ C+ +     I  CCCT+    NC++
Sbjct: 941  NANVTVYACVPTYVCNSLYVYDSCRTLWYDRDITGCCCTN--GPNCNL 986



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 626  DGQ*DRPCGMWNSSSMTVTSCMMDFIEDKL*GYEVCQLV*SQHQIVRCCCTHFFQTNCSI 447
            +GQ     G+     +    CM + I + L  Y+ C+ V + +Q+  CCC +    NC+I
Sbjct: 1324 NGQCSSLSGVVGGFQVNTYHCMPNSICNSLELYDNCKPVWNDNQVTGCCCNN--ANNCNI 1381


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 590  SSSMTVTSCMMDFIEDKL*GYEVCQLV*SQHQIVRCCCTHFFQTNCSI 447
            ++++TV +C+  ++ + L  Y+ C+ +     I  CCCT+    NC++
Sbjct: 941  NANVTVYACVPAYVCNSLYVYDSCRTLWYDRDITGCCCTN--GPNCNL 986



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -1

Query: 626  DGQ*DRPCGMWNSSSMTVTSCMMDFIEDKL*GYEVCQLV*SQHQIVRCCCTHFFQTNCSI 447
            +GQ     G+     +    CM + I + L  Y+ C+ V + +Q+  CCC +    NC+I
Sbjct: 1324 NGQCSSLSGVVGGFQVNTYHCMPNSICNSLELYDNCKPVWNDNQVTGCCCNN--ANNCNI 1381


>U64846-11|AAG24118.2|  231|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform a protein.
          Length = 231

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 85  YLYNSRVFYWVPFLVD*LIISFVFI*VCCL 174
           Y+YN+ VF +   +    IIS +F+ +CCL
Sbjct: 70  YIYNAPVFVFTEDITYHFIISVIFVVLCCL 99


>U64846-10|AAW88397.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein194, isoform b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 85  YLYNSRVFYWVPFLVD*LIISFVFI*VCCL 174
           Y+YN+ VF +   +    IIS +F+ +CCL
Sbjct: 180 YIYNAPVFVFTEDITYHFIISVIFVVLCCL 209


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 642 VHESFRRPIG*TLRYVEQLIDDCNE 568
           VH++F R     LRY E LIDDC+E
Sbjct: 504 VHQNFMRYKLLMLRYSEYLIDDCDE 528


>CU457740-6|CAM36336.1|  365|Caenorhabditis elegans Hypothetical
           protein C50E10.6 protein.
          Length = 365

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -2

Query: 490 YGVAVPIFSKRTVQYLDNLYYETYFMRFLTGF*FL*SKLMTVFTGKIIYLSLRFMAFPFR 311
           Y + +PI++      LD+  Y +YF + L  F  + S    +F G   Y+ +   +F F 
Sbjct: 9   YSIWLPIYT------LDDASYNSYFYQGLLVFELILSIFALIFCGVSGYVMVTTRSFHFH 62

Query: 310 FRQCQVYIILCFL 272
           F      I+L ++
Sbjct: 63  FNTLLAIIVLSWV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,686
Number of Sequences: 27780
Number of extensions: 276497
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)