Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060264.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR...    30   1.3  
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea...    28   5.0  

>At5g49140.1 68418.m06082 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 980

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 595 HIPQGLSYWPSETFVHWGSQK*LHLP 672
           H+P+GL+Y P+   +HW S    ++P
Sbjct: 577 HLPRGLNYLPAVRLLHWDSYPMKYIP 602


>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
           [Homo sapiens]
          Length = 343

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 668 KCSYFWDPQCTKVSDGQ*DRPCGMWNSSS 582
           KCS  W P  TKV+ G  DR   +W+++S
Sbjct: 277 KCS--WSPDGTKVTAGSSDRMVHIWDTTS 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,238,113
Number of Sequences: 28952
Number of extensions: 246999
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)