Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060263.seq
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    25   0.70 
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   2.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   6.5  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 391 SEPTWMFIAAGQLLNVVFGADAPRLARTIEQELQNEELAKKEKENDLKEPLMNLR 555
           S+P W+F  A  L N++F      +      E  N       K  D+ +  +N R
Sbjct: 239 SKPNWLFFLANFLTNLLFWEFDQIVNVAYRMETWNVVFNGSRKNLDVMKSFVNFR 293


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 181 ELNLGRLLATNYDRGFILSCPTVSPSRRDQKGGED 77
           ++NLG  L T Y RGF L+ PT +       GG D
Sbjct: 256 KINLG--LGT-YGRGFALADPTNTSLYAGTYGGSD 287


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 463 LARTIEQELQNEELAKKEKENDLKEPLMNLRL 558
           +A  ++Q  +  E  KKE E+D ++P  + +L
Sbjct: 66  VAGGVQQAGKKPENVKKEDESDEEKPTTSFKL 97


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -2

Query: 362 IVSDLAMARCRLSP 321
           ++SDLA+++C+ +P
Sbjct: 197 VISDLALSKCQNTP 210


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -2

Query: 362 IVSDLAMARCRLSP 321
           ++SDLA+++C+ +P
Sbjct: 197 VISDLALSKCQNTP 210


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 484 PVLWCGLVGERPPRIPRSRVDRQQ 413
           P++ C L   +P R PR+    QQ
Sbjct: 103 PIVRCALRKHKPNRKPRTPFTTQQ 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,271
Number of Sequences: 336
Number of extensions: 3049
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)