Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060263.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    32   0.061
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    29   0.43 
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    27   2.3  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    27   2.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   4.0  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   5.3  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   5.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.3  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    26   5.3  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    25   7.0  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    25   7.0  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = +1

Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
           WCG C  +    +K+  E   D+ ++ +AK D  E          PT MF  A   +N V
Sbjct: 384 WCGHCKNLAPTYEKLAEEYSDDS-NVVVAKIDATENDISVSISGFPTIMFFKANDKVNPV 442

Query: 442 -FGAD--APRLARTIEQELQNEELAKKEKEN 525
            +  D     L+  I++    E + KKEKE+
Sbjct: 443 RYEGDRTLEDLSAFIDKHASFEPI-KKEKES 472


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +1

Query: 259 EWCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNV 438
           +WCGPC  +   L+K+  E       +A+      +  ++    + PT +    GQ L+ 
Sbjct: 45  DWCGPCKYLKPFLEKLS-EQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDR 103

Query: 439 VFGADAPRLA 468
           + GAD   L+
Sbjct: 104 IVGADVKTLS 113


>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 300 LEVPNHPDAGSTPFGDTSITKSPSLL 223
           L + NHPD G +P+  + + ++ SLL
Sbjct: 75  LMLANHPDRGGSPYVASKVNEAKSLL 100


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +1

Query: 475 IEQEL--QNEELAKKEKENDLKEPLMNLRLLSR 567
           +EQ+L    EEL K+E+ ++L +P+M+  L SR
Sbjct: 89  LEQDLLVAQEELRKREQYDELAKPIMSKGLRSR 121


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 460 RLARTIEQELQNEELAKKEKENDLKEPL-MNLRLLSRKLAEAQ 585
           RLA   E   +   L KKEKE   KE +    + LS+K  E Q
Sbjct: 280 RLAEVEEARKEEARLKKKEKERKKKEEMKAQGKYLSKKQKEQQ 322


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 259 EWCGPCIGMVGNLKKIKVELGGDNLHLA-IAKSDTIECLKRFRKRSEPTWMFIAAGQLLN 435
           +WCGPC  +     ++  +        A +   +  +       ++ PT++F   G+ ++
Sbjct: 29  DWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQID 88

Query: 436 VVFGADAPRLARTI 477
           ++ GA+   L   +
Sbjct: 89  MLTGANPQALKEKV 102


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +2

Query: 95  VTTRRGHGRTRQNKPTVIICGKKAAQVQLQAELNTDDEWNKFINRDGL---LVIDVSPNG 265
           +T+ +   RT +    +     + +Q     + N+ +E N+FIN DGL   L +D     
Sbjct: 316 LTSSKSKNRTSKELDDLFGSDDEQSQNVNDLDGNSANEENEFINHDGLDSSLDLDGDSYM 375

Query: 266 VDPASGWLGTSRKSKWS*VETTCTSPSLSQIRL 364
           VD     L   RK K     TT      S+ RL
Sbjct: 376 VDENDLNLAKKRKQKALIDRTTTIENGSSKRRL 408


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 505 PTPRSATPVLWCGLVGERPPRIPRSRVDR 419
           P+PR +T         ERPP +PR +  R
Sbjct: 194 PSPRRSTAATLESAYEERPPSLPRRKPSR 222


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/76 (18%), Positives = 29/76 (38%)
 Frame = +1

Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
           WCGPC  +    ++       D   + +      E        + P++     G+ +  +
Sbjct: 29  WCGPCKAIAPKFEQFS-NTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEI 87

Query: 442 FGADAPRLARTIEQEL 489
            GA+  +L  +I+  L
Sbjct: 88  VGANPAKLEASIKANL 103


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 451 DAPRLARTIEQELQNEELAKKEKENDLKEPL-MNLRLLSR 567
           D     R  ++++  +   +K+K  D+K  + MN RLLSR
Sbjct: 26  DKKSFIRWRQRDIHEKRAVRKQKMEDIKGAMAMNRRLLSR 65


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 427 LLNVVFGADAPRLARTIEQELQNEELAKKEK 519
           +LN +   + P  ++T+++ L+  ELA KEK
Sbjct: 76  VLNALDEIEYPEFSKTLKKHLEAYELALKEK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,840
Number of Sequences: 5004
Number of extensions: 51091
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)