Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060263.seq
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0497 - 17811413-17811529,17811644-17811724,17812693-178128... 38 0.009
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 36 0.021
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 36 0.027
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 34 0.11
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 33 0.19
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 32 0.45
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 31 0.59
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 31 0.78
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 31 0.78
06_02_0084 - 11547820-11548773 31 1.0
04_04_0598 - 26514226-26514545,26516080-26516302 31 1.0
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 31 1.0
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 30 1.8
04_01_0450 - 5840015-5840055,5840635-5840977,5841326-5841537,584... 30 1.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 2.4
08_02_0222 + 14446967-14448310 29 2.4
01_02_0078 - 10894871-10895841,10897268-10898426 29 2.4
06_01_0508 - 3674787-3675140,3675257-3675566,3675672-3675806,367... 29 3.1
01_01_0198 + 1718374-1718875,1719591-1719604 29 4.1
10_07_0089 - 12768987-12770264 28 7.2
06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925... 27 9.6
06_01_0541 - 3874476-3874694,3874816-3874868,3875944-3876055,387... 27 9.6
06_01_0531 - 3836420-3836638,3836760-3836812,3837888-3837999,383... 27 9.6
>08_02_0497 -
17811413-17811529,17811644-17811724,17812693-17812815,
17812945-17813193
Length = 189
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQ 426
WCGPC+ M +++ + VE + L + + D E + + R PT F + Q
Sbjct: 111 WCGPCVLMAQDIEMLAVEYENNALFVKVDTDDEYELARDMQVRGLPTLYFFSPDQ 165
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC +G + K E + + L + + R+ S P++ F+ G+ ++ V
Sbjct: 670 WCGPC-RFIGPVCKSLAEKHRNVVFLKVDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKV 728
Query: 442 FGADAPRLARTIEQ 483
GAD L R + Q
Sbjct: 729 VGADKNGLERKVAQ 742
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC M K++ D L + + E + +R + PT++ G+ + +
Sbjct: 54 WCGPCKMMEPVFKEMAGRFT-DVAFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRI 112
Query: 442 FGADAPRLARTI 477
GAD L +TI
Sbjct: 113 VGADKDELEKTI 124
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 TEWCGPCIGMVGNLKKIKVELGGDNLHLAI-AKSDTIECLKRFRKRSEPTWMFIAAGQLL 432
T+WCGPC M +++ E D + L + D K + PT+ + G+++
Sbjct: 108 TQWCGPCKVMAPKFQEMS-EKDQDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDGKVV 166
Query: 433 NVVFGADAPRLARTIE 480
V GA L + IE
Sbjct: 167 KEVTGAKLDELIQAIE 182
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTI-ECLKRFRKRSEPTWMFIAAGQLLNV 438
WCGPC M + K+ ++ D + L + S PT+ F G+
Sbjct: 110 WCGPCRAMAPVISKLSSRYPKIPIYKVDIDMDGVGSKLSDLKIFSVPTFHFYYQGRKTGE 169
Query: 439 VFGADAPRLARTIE 480
V GA+A +L T+E
Sbjct: 170 VVGANATKLESTME 183
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC ++ + + + L I + ++ + R+ PT+ F+ G+ ++ +
Sbjct: 554 WCGPC-RVIAPVYAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKL 612
Query: 442 FGADAPRLARTI 477
GA+ P L + +
Sbjct: 613 VGANKPELEKKV 624
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC ++ + + + L I D ++ + R+ PT+ FI + ++ +
Sbjct: 55 WCGPC-RVIAPIYAEMSKTYPQLMFLTIDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKL 113
Query: 442 FGADAPRLARTIE 480
GA+ P L + ++
Sbjct: 114 VGANKPELEKKVQ 126
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + + + G + L + + E +++ + PT++FI G + V
Sbjct: 39 WCGPCRFIAPVFAEYAKKFPGA-VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKV 97
Query: 442 FGADAPRLARTI 477
GA L TI
Sbjct: 98 VGARKDDLQNTI 109
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + + K+ E G + + + +F RS PT M G+ + V
Sbjct: 135 WCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAV 194
Query: 442 FGA 450
GA
Sbjct: 195 IGA 197
>06_02_0084 - 11547820-11548773
Length = 317
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 282 DGWEPQENQSGVRWRQPAPRHR 347
DGW P + VRWR+PA R R
Sbjct: 150 DGWWPDWRERRVRWRRPAWRER 171
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVV 441
WCGPC + + K+ E G + + + ++ RS PT M G+ + V
Sbjct: 102 WCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAV 161
Query: 442 FGA 450
GA
Sbjct: 162 IGA 164
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 300 LEVPNHPDAGSTPFGDTSITKSPSLLMNLF 211
L + P AG T FGD +TK LLM+LF
Sbjct: 411 LSYGHEPPAGPTRFGDYFVTKCGVLLMSLF 440
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIE---CLKRFRKRSEPTWMFIAAGQLL 432
WCGPC + + +L + + K D E ++F + PT++F+ G +
Sbjct: 45 WCGPC----RIIAPVFADLAKKHTNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK 100
Query: 433 NVVFGADAPRLARTIE 480
+ V GA LA +E
Sbjct: 101 DRVVGAMKDELASKLE 116
>04_01_0450 -
5840015-5840055,5840635-5840977,5841326-5841537,
5842381-5842477
Length = 230
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 73 RYLRHLFGHDATGTRSDKTK*THGHNLWQEGGPGSTPGR 189
R LR G DA+ T SD+ + HGH W E S G+
Sbjct: 15 RRLRSGQGGDASDTDSDEEQMWHGHGAWGEEHRDSKDGK 53
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 472 TIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
+I +EL + KE EN LK + L + AEAQRE
Sbjct: 825 SIRKELDRTKTKLKETENKLKNSIQEKIKLESEKAEAQRE 864
>08_02_0222 + 14446967-14448310
Length = 447
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -1
Query: 453 VRPEYHVQELTGSNEHPSGLTSLPEPLQTFNRI*LSDGEVQ 331
V PE H QEL G N G PEP+ + GE Q
Sbjct: 313 VLPEQHSQELHGYNNEEQGYLLPPEPIDQEEQALFVGGEPQ 353
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 48 AASVITCTALSSPPFWSRRDGDTVGQ 125
AA + T +A SS P W DGD GQ
Sbjct: 484 AAKLATPSASSSAPSWGEEDGDVEGQ 509
>06_01_0508 -
3674787-3675140,3675257-3675566,3675672-3675806,
3675891-3676100,3676193-3677359,3677397-3677587
Length = 788
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 152 CGKKAAQVQLQAELNTDDEWNK--FINRDGLLVIDVSPNG 265
CG K + V L A+ TD EWN + R + V PNG
Sbjct: 611 CGVKGSDVHLIADAATDSEWNGDCAVYRHASADLVVLPNG 650
>01_01_0198 + 1718374-1718875,1719591-1719604
Length = 171
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +3
Query: 282 DGWEPQENQSGVRWRQPAPRHR*VRYD*MFEAVQEEK*AHLDVHCCRSTLERGIRGGRSP 461
DG P + RWR+PA R R R +EE L + RST G+ G +
Sbjct: 81 DGGRPDWRERRTRWRRPAWRERRGRRWRRRPRCEEE----LPIGVARSTAHEGLPAGGAG 136
Query: 462 TSPHH 476
T H
Sbjct: 137 TQWSH 141
>10_07_0089 - 12768987-12770264
Length = 425
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +2
Query: 62 HLHRVIFATFLVTTRRGHGRTRQNKPTVIICGKKAAQVQLQAELNTDDEWNKFINRDGLL 241
H HR + F + RRG G V+IC + E D DG++
Sbjct: 64 HHHRKVHPPFSPSPRRGGGEPTVMLAFVMICRRNEPDRSFYLESREDGACKLLGCWDGMM 123
Query: 242 VIDV 253
IDV
Sbjct: 124 CIDV 127
>06_03_0911 +
25889333-25889597,25891464-25892038,25892201-25892580,
25892667-25892753,25892812-25893181,25893352-25893762,
25893845-25893904,25894013-25894219
Length = 784
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = -3
Query: 217 LIPLIVGVEFGLELNLGRLLATNYDRGFILSCPTVSPSRRDQKGGEDNAVQVITEAA 47
L PLIVG+ FG+E L LLA G ++S ++ S + G DNA + I A
Sbjct: 669 LSPLIVGIFFGVE-TLSGLLA-----GALVSGVQIAISASNTGGAWDNAKKYIEAGA 719
>06_01_0541 -
3874476-3874694,3874816-3874868,3875944-3876055,
3876143-3876321,3876358-3877195
Length = 466
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 337 LAIAKSDTIECLKRFRKRSEPTWMFIAAGQ-LLNVVFGADAPRLARTIEQELQNEELAKK 513
L +A + ++ L F ++ P ++ Q L+ F D A ++QELQ+ K
Sbjct: 305 LLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVRDEFK 364
Query: 514 EKENDLKEPLMNLRLLSRKL 573
END + + L+ K+
Sbjct: 365 MSENDCGSARVQVAQLTTKI 384
>06_01_0531 -
3836420-3836638,3836760-3836812,3837888-3837999,
3838087-3838265,3838302-3839139
Length = 466
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 337 LAIAKSDTIECLKRFRKRSEPTWMFIAAGQ-LLNVVFGADAPRLARTIEQELQNEELAKK 513
L +A + ++ L F ++ P ++ Q L+ F D A ++QELQ+ K
Sbjct: 305 LLVAAAQSMSALMAFGSQATPAYLLGKPQQELVERYFHPDHMSSAEKMKQELQSVRDEFK 364
Query: 514 EKENDLKEPLMNLRLLSRKL 573
END + + L+ K+
Sbjct: 365 MSENDCGSARVQVAQLTTKI 384
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,810
Number of Sequences: 37544
Number of extensions: 404927
Number of successful extensions: 1107
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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