Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060263.seq
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 30 1.8
SB_22680| Best HMM Match : Peptidase_A17 (HMM E-Value=5.3e-14) 30 1.8
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18) 29 3.2
SB_2649| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9) 28 5.6
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) 27 9.8
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42311| Best HMM Match : SAP (HMM E-Value=2.2e-11) 27 9.8
SB_29903| Best HMM Match : SAP (HMM E-Value=2.2e-11) 27 9.8
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 412 IAAGQLLNVVFGADAPRLARTIEQELQNE 498
I AG L+NV+ G P+L +TI +EL +E
Sbjct: 328 IFAGTLVNVIRGCHCPKLLKTIRKELDHE 356
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 469 RTIEQELQNEELAKKEKE-NDLKEPLMNLRLLSRKLAEAQREACNK 603
+++E+EL+ + A+K K ND + +MN + SRK AEA+RE+ K
Sbjct: 35 KSVEKELKKTKNAEKRKNLNDFLK-VMNQQERSRKSAEAKRESKKK 79
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSD-TIECL--KRFRKRSEPTWMFIAAGQLL 432
WCG C + K +L + + +AK D T E ++F+ + PT F G+
Sbjct: 52 WCGHCKALAPEYAKAAGQLKSEKSEIKLAKVDATAETKLGEKFQVQGYPTIKFFKDGKPS 111
Query: 433 NVVFGADAPRLARTIEQE 486
G AP + + ++
Sbjct: 112 EYAGGRTAPEIVSWLNKK 129
>SB_22680| Best HMM Match : Peptidase_A17 (HMM E-Value=5.3e-14)
Length = 765
Score = 29.9 bits (64), Expect = 1.8
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +1
Query: 235 TFSDRRVTEWCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTIECLKRFR-KRSEPTWMF 411
T RVTE C+ + + VEL GD ++ I L+RFR +R P M
Sbjct: 602 TVKRERVTEKRWGCLFTCMTTRAVHVELAGD-----LSTDAFILALRRFRARRGNPRLMQ 656
Query: 412 IAAGQLLNVVFGADAPRLARTIEQELQNEELAKKEKEND 528
G A LAR I+QE +EL+K+ ++ +
Sbjct: 657 SDNGSNFVGAQRELAEALAR-IDQERVTDELSKERRKKN 694
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 304 IKVELGGDNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNVVFGA 450
I++ N HL + D ++ L + R++ T MF+ G+ N V+ +
Sbjct: 252 IRIISEAKNFHLLPERRDKMQMLTKIRQKDHGTRMFVIGGETHNQVYNS 300
>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 262 WCGPCIGMVGNLKKIKVELGGDNLHLAIAKSDTI-ECLKRFRKRSEPTWMFIAAGQLLNV 438
WC PC + L I E G + LA D + E F + PT + + G+++N
Sbjct: 2 WCNPCKVLTPRLDAIIAEQDG-KVDLAKVDIDVMGELAFNFGVNAVPTVIGMKGGKVINK 60
Query: 439 VFG-ADAPRLARTIEQ 483
G + P++ IEQ
Sbjct: 61 FEGVVEPPQIRHFIEQ 76
>SB_52369| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.18)
Length = 308
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 451 DAPRLARTIEQELQNEELAKKEKENDLKEPLMNLRLL---SRKLAEAQR 588
DAPRLA + E + EE + ++E + +PL R++ RKL + R
Sbjct: 260 DAPRLAPSQEPTQEQEENYEDDEEEEPPKPLKRKRIVLQRGRKLTDPHR 308
>SB_2649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 469 RTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
RT+ E++ +L +E + DL LR+ + +LAE +RE
Sbjct: 26 RTVNNEIRACQLQIREVQADLNSLAETLRVKTHRLAEEERE 66
>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 478 EQELQNEELAKKEKENDLKEPLMNLRLLS 564
+Q+L+ + + +EK DL+ L NL LLS
Sbjct: 151 QQQLETDNVGLQEKAGDLRSSLENLELLS 179
>SB_5239| Best HMM Match : AbfB (HMM E-Value=1.9)
Length = 456
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 325 DNLHLAIAKSDTIECLKRFRKRSEPTWMFIAAGQLLNV 438
+N +L K ++ L FRK P WMF + G+ +V
Sbjct: 402 ENNNLVFNKKHYLQVLGIFRKLMSPAWMFESTGRFGSV 439
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 255 HRMVWTLHRDGWEPQENQSGVRWRQPAPRHR*VRY 359
+R W+ HR G E + + +R P P+H + Y
Sbjct: 3063 NRHTWSAHRTGRELRPQCASIRATDPKPKHTGMTY 3097
>SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13)
Length = 851
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQR 588
ADA T +EL + +K NDL+ ++ L+ L + AQR
Sbjct: 7 ADAGNKQETEPEELTSTNYVSLKKFNDLERDVLELKDLYKSFQSAQR 53
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 463 LARTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQRE 591
L R +E +L+N + A +++ + L N L KL+EAQ +
Sbjct: 1796 LLRNLEVQLENAKHALLDEQKAKSDALENFEKLRVKLSEAQNQ 1838
>SB_42311| Best HMM Match : SAP (HMM E-Value=2.2e-11)
Length = 193
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQR 588
ADA T +EL + +K NDL+ ++ L+ L + AQR
Sbjct: 141 ADAGNKQETEPEELTSTNYVSLKKFNDLERDVLELKDLYKSFQSAQR 187
>SB_29903| Best HMM Match : SAP (HMM E-Value=2.2e-11)
Length = 510
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 448 ADAPRLARTIEQELQNEELAKKEKENDLKEPLMNLRLLSRKLAEAQR 588
ADA T +EL + +K NDL+ ++ L+ L + AQR
Sbjct: 141 ADAGNKQETEPEELTSTNYVSLKKFNDLERDVLELKDLYKSFQSAQR 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,946,157
Number of Sequences: 59808
Number of extensions: 432490
Number of successful extensions: 1183
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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